MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:93.0 nTPM
HPA Brain:76.6 nTPM
GTEx:93.0 nTPM
FANTOM5:161.4 Scaled Tags Per Million
Pig:258.7 nTPM
Mouse:194.9 nTPM
Allen mouse:11.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 76.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 64.1
1870 Female, age 42, unknown 74.6
2411 Female, age 72, unknown 73.0
1833 Male, age 53, unknown 70.7
1827 Male, age 72, unknown 70.2
2666 Male, age 74, left hemisphere 63.6
2219 Male, age 76, both hemispheres 62.0
1830 Male, age 51, unknown 61.9
2828 Female, age 72, unknown 58.4
2019 Male, age 18, unknown 58.3
2586 Male, age 75, left hemisphere 48.2
Dorsal raphe nucleus
nTPM: 69.9
2298 Female, age 72, unknown 75.8
2016 Female, age 72, unknown 70.7
2047 Male, age 72, unknown 70.4
2750 Male, age 76, both hemispheres 69.8
1828 Male, age 53, unknown 62.6
Inferior colliculus
nTPM: 66.4
2097 Female, age 72, unknown 75.7
1890 Male, age 53, unknown 64.0
2849 Male, age 72, unknown 64.0
1848 Female, age 42, unknown 62.1
Median raphe nucleus
nTPM: 70.4
2220 Male, age 76, midline 70.4
Periaquaductal grey, anterior
nTPM: 72.8
1947 Male, age 18, unknown 75.9
2502 Female, age 75, unknown 71.9
1795 Male, age 51, unknown 70.5
Periaquaductal grey, dorsal
nTPM: 66.4
1840 Male, age 53, unknown 77.0
1831 Male, age 72, unknown 63.6
2850 Male, age 76, both hemispheres 63.2
2464 Female, age 72, unknown 61.9
Periaquaductal grey, lateral
nTPM: 65.2
2053 Male, age 18, unknown 75.2
2272 Male, age 74, both hemispheres 62.7
2140 Male, age 76, both hemispheres 57.6
Pretectal area
nTPM: 64.8
1817 Female, age 42, unknown 71.6
2825 Male, age 18, unknown 68.8
1816 Male, age 51, unknown 67.5
2407 Male, age 75, both hemispheres 66.6
2224 Female, age 72, unknown 66.4
1815 Male, age 53, unknown 65.8
1944 Female, age 72, unknown 64.4
2273 Male, age 74, both hemispheres 64.0
2007 Male, age 72, unknown 63.8
2667 Female, age 75, unknown 60.3
2316 Male, age 76, right hemisphere 53.4
Red nucleus
nTPM: 66.6
1821 Female, age 72, unknown 78.0
2503 Female, age 72, unknown 72.4
2725 Female, age 75, unknown 70.7
1904 Male, age 53, unknown 69.5
2584 Male, age 75, left hemisphere 67.5
1954 Female, age 42, unknown 66.6
2769 Male, age 72, unknown 66.1
1865 Male, age 51, unknown 65.8
2823 Male, age 76, right hemisphere 63.6
2227 Male, age 72, unknown 63.0
2588 Male, age 74, left hemisphere 59.9
2785 Male, age 18, unknown 56.5
Substantia nigra
nTPM: 76.6
2409 Female, age 72, unknown 91.7
1851 Male, age 51, unknown 85.1
2241 Male, age 72, unknown 80.2
1889 Female, age 72, unknown 78.1
2665 Male, age 74, both hemispheres 77.0
1916 Female, age 42, unknown 76.4
2590 Female, age 75, unknown 74.1
2699 Male, age 18, unknown 71.7
1941 Male, age 53, unknown 69.8
2583 Male, age 75, right hemisphere 61.9
Superior colliculus
nTPM: 67.1
2587 Male, age 74, left hemisphere 81.9
1895 Male, age 76, right hemisphere 72.8
2261 Male, age 18, unknown 70.3
2668 Female, age 75, unknown 69.7
1839 Male, age 51, unknown 67.9
1913 Female, age 42, unknown 66.8
1796 Male, age 53, unknown 66.3
1995 Male, age 72, unknown 65.5
2087 Female, age 72, unknown 61.0
2664 Male, age 75, both hemispheres 48.6
Ventral tegmental area
nTPM: 73.9
2410 Female, age 72, unknown 85.7
2223 Female, age 72, unknown 76.0
1915 Female, age 42, unknown 74.6
2218 Male, age 76, both hemispheres 73.5
2021 Male, age 53, unknown 67.7
1942 Male, age 51, unknown 66.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 93.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 93.0
Samples: 183

Max nTPM: 167.4
Min nTPM: 55.3
Std nTPM: 20.4
Median nTPM: 90.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 167.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 159.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 157.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 147.7
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 142.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 132.0
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 129.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 128.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 128.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 127.9
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 126.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 161.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 161.4
FF:10158-103A5 76 years, female 161.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 258.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 234.3
Samples: 4

Max nTPM: 315.9
Min nTPM: 180.3
Sample A Female 315.9
Sample B Female 225.5
Sample C Male 215.5
Sample D Male 180.3
Midbrain
nTPM: 249.3
Samples: 4

Max nTPM: 319.2
Min nTPM: 209.8
Sample A Female 319.2
Sample B Female 239.5
Sample C Male 228.7
Sample D Male 209.8
Periaqueductal gray
nTPM: 183.7
Samples: 3

Max nTPM: 191.5
Min nTPM: 168.4
Sample B Female 191.2
Sample C Male 191.5
Sample D Male 168.4
Superior colliculi
nTPM: 258.7
Samples: 4

Max nTPM: 326.8
Min nTPM: 224.3
Sample A Female 326.8
Sample B Female 235.0
Sample C Male 248.8
Sample D Male 224.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 194.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 194.9
Samples: 4

Max nTPM: 203.3
Min nTPM: 186.1
Sample A Male 203.3
Sample B Male 194.3
Sample C Female 186.1
Sample D Female 195.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 11.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.6
67765724 Antisense, RP_040916_01_F09, Mouse strain C57BL/6J (56 days, male) 11.6

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