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  • EIF3H
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:111.2 nTPM
HPA Brain:91.7 nTPM
GTEx:111.2 nTPM
FANTOM5:210.5 Scaled Tags Per Million
Pig:249.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

91.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 80.1
1981 Female, age 72, midline 100.2
2048 Male, age 55, midline 92.5
2565 Male, age 75, midline 77.9
2816 Male, age 47, midline 67.1
2194 Female, age 79, both hemispheres 62.5
Cervical spinal cord, dorsal horn
nTPM: 84.6
2069 Male, age 47, both hemispheres 106.9
2173 Female, age 72, unknown 106.1
2296 Male, age 66, both hemispheres 101.4
1877 Male, age 55, unknown 75.1
2297 Male, age 75, both hemispheres 60.6
2721 Male, age 90, both hemispheres 57.3
Cervical spinal cord, ventral horn
nTPM: 91.7
2480 Male, age 75, both hemispheres 131.5
2809 Male, age 90, both hemispheres 106.5
2098 Female, age 72, unknown 104.0
2295 Male, age 66, both hemispheres 83.5
2068 Male, age 55, unknown 74.0
2820 Female, age 79, both hemispheres 50.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

111.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 111.2
Samples: 204

Max nTPM: 187.4
Min nTPM: 61.2
Std nTPM: 22.9
Median nTPM: 108.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 187.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 181.0
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 177.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 167.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 165.7
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 165.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 163.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 163.2
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 162.1
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 161.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 150.1
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 149.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 147.8
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 147.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 145.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 145.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 144.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 144.3
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 143.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 142.9
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 142.3
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 141.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 140.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 138.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 138.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 136.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 135.6
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 135.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 135.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 135.4
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 134.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 133.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 133.5
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 132.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 131.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 131.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 129.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 129.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 128.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 128.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 127.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 127.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 127.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 127.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 125.5
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 125.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 125.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 125.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 124.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 124.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 123.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 123.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 123.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 123.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 123.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 123.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 123.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 123.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 122.8
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 122.8
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 121.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 120.8
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 120.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 120.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 119.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 119.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 119.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 119.3
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 118.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 118.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 118.5
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 118.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 117.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 117.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 116.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 116.1
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 115.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 115.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 115.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 115.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 114.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 114.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 113.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 113.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 112.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 112.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 112.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 112.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 112.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 111.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 111.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 110.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 110.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 110.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 110.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 110.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 110.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 110.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 110.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 109.8
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 109.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 109.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 108.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 108.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 108.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 107.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 107.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 106.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 106.7
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 105.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 105.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 105.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 105.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 105.4
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 105.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 104.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 104.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 104.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 104.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 104.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 103.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 103.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 102.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 102.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 102.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 102.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 101.7
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 101.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 100.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 100.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 100.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 100.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 100.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 100.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 100.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 99.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 99.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 99.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 99.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 98.7
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 98.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 98.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 98.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 98.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 98.2
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 98.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 98.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 98.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 97.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 97.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 97.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 97.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 96.8
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 96.5
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 96.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 96.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 96.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 95.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 95.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 95.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 94.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 94.7
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 94.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 94.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 93.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 93.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 93.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 92.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 91.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 90.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 90.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 90.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 89.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 88.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 87.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 86.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 86.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 85.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 85.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 84.8
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 84.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 83.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 82.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 82.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 82.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 82.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 81.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 81.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 80.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 80.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 80.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 80.0
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 78.1
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 78.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 76.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 75.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 74.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 74.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 71.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 70.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 69.5
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 69.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 66.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 61.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

210.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 210.5
FF:10159-103A6 76 years, female 232.1
FF:10181-103D1 60 years, female 188.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

249.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 249.9
Samples: 4

Max nTPM: 308.5
Min nTPM: 193.3
Sample A Female 231.3
Sample B Female 266.6
Sample C Male 308.5
Sample D Male 193.3
Ventral spinal cord
nTPM: 232.2
Samples: 4

Max nTPM: 251.6
Min nTPM: 215.8
Sample A Female 215.8
Sample B Female 236.3
Sample C Male 251.6
Sample D Male 225.2

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