MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:95.4 nTPM
HPA Brain:146.2 nTPM
GTEx:95.4 nTPM
FANTOM5:151.5 Scaled Tags Per Million
Pig:36.1 nTPM
Mouse:9.6 nTPM
Allen mouse:2.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 146.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 91.5
2828 Female, age 72, unknown 118.9
1870 Female, age 42, unknown 114.3
2666 Male, age 74, left hemisphere 101.3
2586 Male, age 75, left hemisphere 96.1
1833 Male, age 53, unknown 93.9
2411 Female, age 72, unknown 90.8
1830 Male, age 51, unknown 90.1
1827 Male, age 72, unknown 80.5
2019 Male, age 18, unknown 71.0
2219 Male, age 76, both hemispheres 58.4
Dorsal raphe nucleus
nTPM: 134.2
2047 Male, age 72, unknown 152.2
2016 Female, age 72, unknown 146.6
2298 Female, age 72, unknown 131.7
1828 Male, age 53, unknown 131.4
2750 Male, age 76, both hemispheres 109.3
Inferior colliculus
nTPM: 109.6
1890 Male, age 53, unknown 115.0
2097 Female, age 72, unknown 114.4
2849 Male, age 72, unknown 104.8
1848 Female, age 42, unknown 104.4
Median raphe nucleus
nTPM: 133.2
2220 Male, age 76, midline 133.2
Periaquaductal grey, anterior
nTPM: 131.6
1795 Male, age 51, unknown 146.0
1947 Male, age 18, unknown 128.1
2502 Female, age 75, unknown 120.8
Periaquaductal grey, dorsal
nTPM: 146.2
2850 Male, age 76, both hemispheres 186.0
1840 Male, age 53, unknown 159.4
1831 Male, age 72, unknown 120.0
2464 Female, age 72, unknown 119.2
Periaquaductal grey, lateral
nTPM: 142.9
2140 Male, age 76, both hemispheres 165.3
2053 Male, age 18, unknown 159.7
2272 Male, age 74, both hemispheres 103.5
Pretectal area
nTPM: 108.3
2224 Female, age 72, unknown 141.8
2667 Female, age 75, unknown 132.4
1817 Female, age 42, unknown 130.5
2825 Male, age 18, unknown 119.4
1944 Female, age 72, unknown 107.6
2316 Male, age 76, right hemisphere 104.3
1815 Male, age 53, unknown 103.3
2273 Male, age 74, both hemispheres 103.2
1816 Male, age 51, unknown 92.2
2407 Male, age 75, both hemispheres 85.1
2007 Male, age 72, unknown 72.1
Red nucleus
nTPM: 96.9
1821 Female, age 72, unknown 121.3
1954 Female, age 42, unknown 114.9
2227 Male, age 72, unknown 108.2
1904 Male, age 53, unknown 107.5
2769 Male, age 72, unknown 104.0
2823 Male, age 76, right hemisphere 102.2
2503 Female, age 72, unknown 96.3
2725 Female, age 75, unknown 92.6
1865 Male, age 51, unknown 91.8
2588 Male, age 74, left hemisphere 90.4
2785 Male, age 18, unknown 70.8
2584 Male, age 75, left hemisphere 62.5
Substantia nigra
nTPM: 111.9
2699 Male, age 18, unknown 147.1
2665 Male, age 74, both hemispheres 138.1
1916 Female, age 42, unknown 137.5
1851 Male, age 51, unknown 124.6
2241 Male, age 72, unknown 119.0
2409 Female, age 72, unknown 112.3
1889 Female, age 72, unknown 102.9
2590 Female, age 75, unknown 96.3
1941 Male, age 53, unknown 75.9
2583 Male, age 75, right hemisphere 65.3
Superior colliculus
nTPM: 100.2
1995 Male, age 72, unknown 131.2
2087 Female, age 72, unknown 122.9
1913 Female, age 42, unknown 106.4
2664 Male, age 75, both hemispheres 101.0
2668 Female, age 75, unknown 100.2
2261 Male, age 18, unknown 99.1
2587 Male, age 74, left hemisphere 93.6
1796 Male, age 53, unknown 91.1
1839 Male, age 51, unknown 89.9
1895 Male, age 76, right hemisphere 66.9
Ventral tegmental area
nTPM: 119.2
2021 Male, age 53, unknown 139.8
1915 Female, age 42, unknown 123.2
1942 Male, age 51, unknown 121.7
2218 Male, age 76, both hemispheres 119.2
2410 Female, age 72, unknown 109.0
2223 Female, age 72, unknown 102.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 95.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 95.4
Samples: 183

Max nTPM: 261.8
Min nTPM: 13.9
Std nTPM: 48.6
Median nTPM: 81.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 261.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 255.8
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 252.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 245.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 235.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 231.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 227.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 225.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 219.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 217.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 199.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 151.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 151.5
FF:10158-103A5 76 years, female 151.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 36.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 36.1
Samples: 4

Max nTPM: 46.6
Min nTPM: 25.4
Sample A Female 36.4
Sample B Female 46.6
Sample C Male 25.4
Sample D Male 35.8
Midbrain
nTPM: 32.9
Samples: 4

Max nTPM: 72.2
Min nTPM: 16.9
Sample A Female 72.2
Sample B Female 21.6
Sample C Male 20.7
Sample D Male 16.9
Periaqueductal gray
nTPM: 17.0
Samples: 3

Max nTPM: 19.0
Min nTPM: 15.7
Sample B Female 19.0
Sample C Male 15.7
Sample D Male 16.3
Superior colliculi
nTPM: 31.4
Samples: 4

Max nTPM: 45.9
Min nTPM: 20.0
Sample A Female 34.0
Sample B Female 45.9
Sample C Male 20.0
Sample D Male 25.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 9.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.7
Samples: 4

Max nTPM: 10.4
Min nTPM: 9.1
Sample A Male 10.4
Sample B Male 9.7
Sample C Female 9.4
Sample D Female 9.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
69080003 Antisense, RP_050324_01_C03, Mouse strain C57BL/6J (56 days, male) 4.9
71919254 Antisense, RP_051012_02_C06, Mouse strain C57BL/6J (56 days, male) 0.1

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