MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:105.2 nTPM
HPA Brain:102.1 nTPM
GTEx:105.2 nTPM
FANTOM5:145.5 Scaled Tags Per Million
Pig:14.6 nTPM
Mouse:25.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 102.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 92.4
2586 Male, age 75, left hemisphere 110.9
2828 Female, age 72, unknown 105.7
2666 Male, age 74, left hemisphere 101.3
2411 Female, age 72, unknown 93.4
1830 Male, age 51, unknown 92.0
1870 Female, age 42, unknown 91.4
2019 Male, age 18, unknown 88.6
1833 Male, age 53, unknown 84.1
1827 Male, age 72, unknown 82.9
2219 Male, age 76, both hemispheres 73.9
Dorsal raphe nucleus
nTPM: 87.3
2016 Female, age 72, unknown 105.0
1828 Male, age 53, unknown 96.7
2750 Male, age 76, both hemispheres 88.1
2047 Male, age 72, unknown 75.4
2298 Female, age 72, unknown 71.1
Inferior colliculus
nTPM: 80.6
2849 Male, age 72, unknown 89.7
1890 Male, age 53, unknown 82.6
2097 Female, age 72, unknown 75.4
1848 Female, age 42, unknown 74.9
Median raphe nucleus
nTPM: 69.1
2220 Male, age 76, midline 69.1
Periaquaductal grey, anterior
nTPM: 81.1
2502 Female, age 75, unknown 85.9
1947 Male, age 18, unknown 80.8
1795 Male, age 51, unknown 76.7
Periaquaductal grey, dorsal
nTPM: 83.0
2464 Female, age 72, unknown 87.5
1840 Male, age 53, unknown 85.9
2850 Male, age 76, both hemispheres 82.3
1831 Male, age 72, unknown 76.3
Periaquaductal grey, lateral
nTPM: 84.9
2140 Male, age 76, both hemispheres 92.4
2053 Male, age 18, unknown 91.9
2272 Male, age 74, both hemispheres 70.4
Pretectal area
nTPM: 81.0
2667 Female, age 75, unknown 91.3
2407 Male, age 75, both hemispheres 89.1
2825 Male, age 18, unknown 86.9
2316 Male, age 76, right hemisphere 86.6
1815 Male, age 53, unknown 83.0
2224 Female, age 72, unknown 79.5
1817 Female, age 42, unknown 78.9
1944 Female, age 72, unknown 75.8
1816 Male, age 51, unknown 74.3
2007 Male, age 72, unknown 73.7
2273 Male, age 74, both hemispheres 71.9
Red nucleus
nTPM: 102.1
2503 Female, age 72, unknown 113.6
2769 Male, age 72, unknown 109.6
2588 Male, age 74, left hemisphere 107.0
2227 Male, age 72, unknown 106.5
2725 Female, age 75, unknown 104.0
1865 Male, age 51, unknown 103.9
1954 Female, age 42, unknown 103.8
1821 Female, age 72, unknown 101.4
2823 Male, age 76, right hemisphere 96.7
1904 Male, age 53, unknown 96.5
2584 Male, age 75, left hemisphere 93.6
2785 Male, age 18, unknown 89.1
Substantia nigra
nTPM: 86.9
2699 Male, age 18, unknown 103.7
1851 Male, age 51, unknown 93.9
2583 Male, age 75, right hemisphere 93.4
2665 Male, age 74, both hemispheres 92.6
2590 Female, age 75, unknown 91.8
1941 Male, age 53, unknown 86.7
2409 Female, age 72, unknown 79.4
2241 Male, age 72, unknown 78.3
1889 Female, age 72, unknown 74.9
1916 Female, age 42, unknown 74.2
Superior colliculus
nTPM: 86.2
1995 Male, age 72, unknown 112.7
2664 Male, age 75, both hemispheres 107.3
1913 Female, age 42, unknown 104.6
1839 Male, age 51, unknown 86.3
2587 Male, age 74, left hemisphere 82.6
2087 Female, age 72, unknown 82.2
1796 Male, age 53, unknown 79.0
2261 Male, age 18, unknown 71.6
1895 Male, age 76, right hemisphere 70.4
2668 Female, age 75, unknown 65.3
Ventral tegmental area
nTPM: 87.4
2223 Female, age 72, unknown 94.8
2410 Female, age 72, unknown 89.5
1942 Male, age 51, unknown 88.8
2021 Male, age 53, unknown 87.9
1915 Female, age 42, unknown 84.1
2218 Male, age 76, both hemispheres 79.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 105.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 105.2
Samples: 183

Max nTPM: 307.1
Min nTPM: 22.7
Std nTPM: 45.1
Median nTPM: 100.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 307.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 246.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 213.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 210.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 204.0
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 197.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 195.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 194.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 189.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 186.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 184.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 145.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 145.5
FF:10158-103A5 76 years, female 145.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 14.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.9
Samples: 4

Max nTPM: 13.5
Min nTPM: 10.8
Sample A Female 13.5
Sample B Female 11.2
Sample C Male 11.9
Sample D Male 10.8
Midbrain
nTPM: 14.6
Samples: 4

Max nTPM: 23.6
Min nTPM: 8.8
Sample A Female 23.6
Sample B Female 11.6
Sample C Male 14.4
Sample D Male 8.8
Periaqueductal gray
nTPM: 9.7
Samples: 3

Max nTPM: 10.8
Min nTPM: 8.6
Sample B Female 9.8
Sample C Male 10.8
Sample D Male 8.6
Superior colliculi
nTPM: 11.7
Samples: 4

Max nTPM: 13.9
Min nTPM: 9.9
Sample A Female 12.1
Sample B Female 10.8
Sample C Male 13.9
Sample D Male 9.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 25.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.6
Samples: 4

Max nTPM: 27.2
Min nTPM: 24.1
Sample A Male 27.2
Sample B Male 24.1
Sample C Female 24.8
Sample D Female 26.3

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