MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:62.9 nTPM
HPA Brain:140.6 nTPM
GTEx:62.9 nTPM
FANTOM5:51.8 Scaled Tags Per Million
Pig:86.1 nTPM
Mouse:189.0 nTPM
Allen mouse:14.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 140.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 114.1
2586 Male, age 75, left hemisphere 169.6
2019 Male, age 18, unknown 150.0
2828 Female, age 72, unknown 125.3
1827 Male, age 72, unknown 110.9
1870 Female, age 42, unknown 107.3
2666 Male, age 74, left hemisphere 102.0
1833 Male, age 53, unknown 98.3
2411 Female, age 72, unknown 98.1
1830 Male, age 51, unknown 92.9
2219 Male, age 76, both hemispheres 86.4
Dorsal raphe nucleus
nTPM: 111.5
2047 Male, age 72, unknown 128.9
2016 Female, age 72, unknown 124.6
1828 Male, age 53, unknown 121.1
2298 Female, age 72, unknown 117.9
2750 Male, age 76, both hemispheres 65.0
Inferior colliculus
nTPM: 140.6
1848 Female, age 42, unknown 164.8
2849 Male, age 72, unknown 151.6
2097 Female, age 72, unknown 125.7
1890 Male, age 53, unknown 120.4
Median raphe nucleus
nTPM: 73.0
2220 Male, age 76, midline 73.0
Periaquaductal grey, anterior
nTPM: 103.9
2502 Female, age 75, unknown 115.3
1795 Male, age 51, unknown 106.3
1947 Male, age 18, unknown 90.1
Periaquaductal grey, dorsal
nTPM: 104.2
1840 Male, age 53, unknown 142.3
2464 Female, age 72, unknown 120.8
1831 Male, age 72, unknown 80.3
2850 Male, age 76, both hemispheres 73.5
Periaquaductal grey, lateral
nTPM: 92.8
2053 Male, age 18, unknown 100.8
2272 Male, age 74, both hemispheres 93.0
2140 Male, age 76, both hemispheres 84.7
Pretectal area
nTPM: 118.8
2667 Female, age 75, unknown 142.9
1817 Female, age 42, unknown 141.9
2007 Male, age 72, unknown 139.7
1944 Female, age 72, unknown 130.4
2273 Male, age 74, both hemispheres 125.6
1816 Male, age 51, unknown 123.2
2407 Male, age 75, both hemispheres 114.7
2224 Female, age 72, unknown 107.4
2825 Male, age 18, unknown 101.3
1815 Male, age 53, unknown 100.3
2316 Male, age 76, right hemisphere 78.8
Red nucleus
nTPM: 105.7
1821 Female, age 72, unknown 125.9
1954 Female, age 42, unknown 120.2
2785 Male, age 18, unknown 119.3
2503 Female, age 72, unknown 117.8
2227 Male, age 72, unknown 114.6
2769 Male, age 72, unknown 114.4
2588 Male, age 74, left hemisphere 108.2
2584 Male, age 75, left hemisphere 97.9
1865 Male, age 51, unknown 94.4
2725 Female, age 75, unknown 89.9
1904 Male, age 53, unknown 86.3
2823 Male, age 76, right hemisphere 80.1
Substantia nigra
nTPM: 111.1
1941 Male, age 53, unknown 142.9
1916 Female, age 42, unknown 127.9
2583 Male, age 75, right hemisphere 126.8
1889 Female, age 72, unknown 120.5
2665 Male, age 74, both hemispheres 112.6
2241 Male, age 72, unknown 108.3
1851 Male, age 51, unknown 103.3
2699 Male, age 18, unknown 96.5
2409 Female, age 72, unknown 88.5
2590 Female, age 75, unknown 83.6
Superior colliculus
nTPM: 112.4
2664 Male, age 75, both hemispheres 185.2
1839 Male, age 51, unknown 125.0
1895 Male, age 76, right hemisphere 123.2
2668 Female, age 75, unknown 121.7
1796 Male, age 53, unknown 110.6
2087 Female, age 72, unknown 110.2
2587 Male, age 74, left hemisphere 105.4
2261 Male, age 18, unknown 98.1
1995 Male, age 72, unknown 74.9
1913 Female, age 42, unknown 70.0
Ventral tegmental area
nTPM: 93.8
2410 Female, age 72, unknown 122.5
1915 Female, age 42, unknown 105.7
1942 Male, age 51, unknown 104.7
2021 Male, age 53, unknown 81.5
2223 Female, age 72, unknown 77.0
2218 Male, age 76, both hemispheres 71.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 62.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.9
Samples: 183

Max nTPM: 152.5
Min nTPM: 10.2
Std nTPM: 26.9
Median nTPM: 60.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 152.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 144.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 138.9
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 126.9
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 124.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 118.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 115.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 115.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 112.1
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 111.1
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 110.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 51.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.8
FF:10158-103A5 76 years, female 51.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 86.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 78.3
Samples: 4

Max nTPM: 98.0
Min nTPM: 67.2
Sample A Female 98.0
Sample B Female 67.2
Sample C Male 76.1
Sample D Male 71.9
Midbrain
nTPM: 85.0
Samples: 4

Max nTPM: 108.6
Min nTPM: 67.9
Sample A Female 108.6
Sample B Female 67.9
Sample C Male 74.6
Sample D Male 88.9
Periaqueductal gray
nTPM: 67.0
Samples: 3

Max nTPM: 74.9
Min nTPM: 60.6
Sample B Female 65.6
Sample C Male 74.9
Sample D Male 60.6
Superior colliculi
nTPM: 86.2
Samples: 4

Max nTPM: 109.8
Min nTPM: 45.0
Sample A Female 109.8
Sample B Female 45.0
Sample C Male 99.5
Sample D Male 90.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 189.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 189.0
Samples: 4

Max nTPM: 197.1
Min nTPM: 184.6
Sample A Male 197.1
Sample B Male 188.7
Sample C Female 185.4
Sample D Female 184.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.0
190 Antisense, RP_Baylor_253885, Mouse strain C57BL/6J (56 days, male) 14.0
189 Antisense, RP_Baylor_253885, Mouse strain C57BL/6J (56 days, male) 12.7

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