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  • TISSUE

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:129.2 nTPM
FANTOM5:84.4 Scaled Tags Per Million
Pig:46.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA026810
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

129.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 129.2
Samples: 300

Max nTPM: 524.4
Min nTPM: 19.6
Std nTPM: 76.5
Median nTPM: 107.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 524.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 476.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 414.5
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 390.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 356.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 351.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 313.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 308.5
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 307.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 302.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 296.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 295.2
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 289.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 270.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 269.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 262.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 259.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 259.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 259.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 255.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 254.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 253.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 252.4
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 252.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 251.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 244.5
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 244.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 244.1
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 242.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 240.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 240.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 234.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 231.9
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 231.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 230.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 225.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 222.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 221.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 218.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 218.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 217.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 216.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 214.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 214.3
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 213.7
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 206.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 205.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 203.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 203.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 201.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 201.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 200.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 197.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 197.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 193.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 191.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 187.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 187.4
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 187.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 184.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 184.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 177.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 175.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 171.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 167.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 166.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 166.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 163.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 162.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 161.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 161.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 160.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 160.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 159.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 159.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 158.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 157.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 157.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 155.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 155.1
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 154.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 153.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 153.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 152.1
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 151.9
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 151.1
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 150.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 149.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 147.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 145.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 144.7
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 144.3
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 144.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 143.6
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 143.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 142.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 138.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 138.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 138.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 138.0
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 137.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 137.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 137.3
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 136.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 136.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 134.6
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 133.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 133.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 133.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 132.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 131.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 130.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 130.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 129.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 129.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 128.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 128.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 128.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 124.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 124.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 123.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 121.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 121.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 120.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 120.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 120.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 118.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 118.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 116.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 116.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 115.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 115.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 115.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 114.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 113.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 113.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 113.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 112.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 112.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 111.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 111.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 110.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 110.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 110.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 109.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 108.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 108.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 108.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 108.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 108.0
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 107.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 107.2
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 107.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 106.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 106.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 106.3
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 106.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 105.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 105.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 105.4
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 105.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 104.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 104.6
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 104.5
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 104.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 103.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 103.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 103.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 103.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 103.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 102.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 102.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 102.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 102.4
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 100.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 100.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 99.8
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 99.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 97.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 96.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 96.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 96.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 95.5
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 95.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 94.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 94.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 94.1
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 93.2
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 92.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 92.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 92.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 91.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 91.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 91.5
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 91.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 90.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 89.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 88.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 88.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 87.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 87.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 86.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 86.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 86.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 84.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 84.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 84.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 84.3
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 84.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 82.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 82.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 82.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 80.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 80.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 80.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 79.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 79.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 79.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 78.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 78.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 77.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 77.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 76.8
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 76.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 76.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 75.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 74.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 74.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 73.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 73.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 73.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 72.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 72.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 72.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 72.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 71.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 70.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 70.0
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 69.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 69.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 68.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 68.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 68.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 68.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 68.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 67.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 67.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 67.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 67.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 67.1
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 66.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 65.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 64.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 64.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 64.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 63.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 63.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 63.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 62.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 61.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 60.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 59.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 59.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 59.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 58.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 58.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 57.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 57.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 57.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 55.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 54.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 52.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 52.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 52.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 52.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 51.5
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 50.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 48.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 48.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 47.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 46.6
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 46.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 45.4
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 44.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 44.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 42.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 42.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 40.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 39.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 39.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 38.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 37.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 37.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 37.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 36.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 32.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 29.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 29.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 29.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 19.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

84.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 84.4
FF:10164-103B2 76 years, female 84.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.0
Pig sample Sample description nTPM
Caudate
nTPM: 46.0
Samples: 4

Max nTPM: 90.5
Min nTPM: 15.1
Sample A Female 15.1
Sample B Female 21.1
Sample C Male 90.5
Sample D Male 57.3

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