MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:69.0 nTPM
HPA Brain:118.7 nTPM
GTEx:69.0 nTPM
FANTOM5:273.9 Scaled Tags Per Million
Pig:146.2 nTPM
Mouse:57.4 nTPM
Allen mouse:1.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 118.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 93.8
2828 Female, age 72, unknown 116.1
1870 Female, age 42, unknown 104.5
1827 Male, age 72, unknown 99.4
2586 Male, age 75, left hemisphere 99.3
1833 Male, age 53, unknown 92.1
1830 Male, age 51, unknown 90.8
2019 Male, age 18, unknown 90.0
2411 Female, age 72, unknown 84.8
2666 Male, age 74, left hemisphere 81.7
2219 Male, age 76, both hemispheres 79.4
Dorsal raphe nucleus
nTPM: 108.6
2016 Female, age 72, unknown 148.3
2298 Female, age 72, unknown 111.2
1828 Male, age 53, unknown 106.8
2047 Male, age 72, unknown 90.7
2750 Male, age 76, both hemispheres 85.9
Inferior colliculus
nTPM: 103.4
2097 Female, age 72, unknown 110.7
1848 Female, age 42, unknown 106.4
2849 Male, age 72, unknown 101.5
1890 Male, age 53, unknown 94.9
Median raphe nucleus
nTPM: 75.2
2220 Male, age 76, midline 75.2
Periaquaductal grey, anterior
nTPM: 101.6
1795 Male, age 51, unknown 104.2
1947 Male, age 18, unknown 101.7
2502 Female, age 75, unknown 98.9
Periaquaductal grey, dorsal
nTPM: 118.7
2850 Male, age 76, both hemispheres 130.8
1840 Male, age 53, unknown 123.8
1831 Male, age 72, unknown 116.0
2464 Female, age 72, unknown 104.3
Periaquaductal grey, lateral
nTPM: 108.3
2053 Male, age 18, unknown 118.4
2140 Male, age 76, both hemispheres 117.0
2272 Male, age 74, both hemispheres 89.4
Pretectal area
nTPM: 106.1
2273 Male, age 74, both hemispheres 133.8
1815 Male, age 53, unknown 114.0
2407 Male, age 75, both hemispheres 111.6
2224 Female, age 72, unknown 110.4
2316 Male, age 76, right hemisphere 108.8
1944 Female, age 72, unknown 106.9
1816 Male, age 51, unknown 100.5
1817 Female, age 42, unknown 99.1
2825 Male, age 18, unknown 98.9
2667 Female, age 75, unknown 98.2
2007 Male, age 72, unknown 85.0
Red nucleus
nTPM: 92.8
2503 Female, age 72, unknown 109.1
1904 Male, age 53, unknown 106.4
1954 Female, age 42, unknown 101.9
1821 Female, age 72, unknown 101.5
1865 Male, age 51, unknown 97.4
2769 Male, age 72, unknown 95.7
2227 Male, age 72, unknown 94.1
2823 Male, age 76, right hemisphere 93.6
2785 Male, age 18, unknown 89.4
2725 Female, age 75, unknown 86.5
2588 Male, age 74, left hemisphere 74.1
2584 Male, age 75, left hemisphere 64.4
Substantia nigra
nTPM: 98.8
2699 Male, age 18, unknown 121.6
2409 Female, age 72, unknown 114.2
2590 Female, age 75, unknown 108.6
1889 Female, age 72, unknown 103.6
2583 Male, age 75, right hemisphere 99.6
1851 Male, age 51, unknown 97.8
2241 Male, age 72, unknown 93.4
2665 Male, age 74, both hemispheres 90.4
1941 Male, age 53, unknown 83.2
1916 Female, age 42, unknown 76.1
Superior colliculus
nTPM: 115.9
1995 Male, age 72, unknown 159.7
1913 Female, age 42, unknown 135.7
2664 Male, age 75, both hemispheres 125.4
2668 Female, age 75, unknown 120.9
2587 Male, age 74, left hemisphere 116.9
2087 Female, age 72, unknown 108.5
1839 Male, age 51, unknown 106.3
1796 Male, age 53, unknown 98.8
2261 Male, age 18, unknown 94.8
1895 Male, age 76, right hemisphere 92.1
Ventral tegmental area
nTPM: 96.3
2021 Male, age 53, unknown 109.5
1942 Male, age 51, unknown 102.4
1915 Female, age 42, unknown 98.0
2223 Female, age 72, unknown 96.4
2410 Female, age 72, unknown 92.7
2218 Male, age 76, both hemispheres 79.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 69.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 69.0
Samples: 183

Max nTPM: 144.9
Min nTPM: 17.4
Std nTPM: 25.3
Median nTPM: 67.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 144.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 134.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 134.1
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 125.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 121.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 120.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 118.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 117.1
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 115.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 110.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 109.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 273.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 273.9
FF:10158-103A5 76 years, female 273.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 146.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 125.3
Samples: 4

Max nTPM: 142.7
Min nTPM: 111.3
Sample A Female 131.5
Sample B Female 111.3
Sample C Male 115.5
Sample D Male 142.7
Midbrain
nTPM: 146.2
Samples: 4

Max nTPM: 205.8
Min nTPM: 103.1
Sample A Female 205.8
Sample B Female 133.5
Sample C Male 142.3
Sample D Male 103.1
Periaqueductal gray
nTPM: 118.0
Samples: 3

Max nTPM: 129.2
Min nTPM: 102.7
Sample B Female 122.1
Sample C Male 102.7
Sample D Male 129.2
Superior colliculi
nTPM: 140.1
Samples: 4

Max nTPM: 160.4
Min nTPM: 127.4
Sample A Female 127.4
Sample B Female 160.4
Sample C Male 138.5
Sample D Male 134.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 57.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 57.4
Samples: 4

Max nTPM: 60.8
Min nTPM: 53.4
Sample A Male 60.8
Sample B Male 58.2
Sample C Female 57.2
Sample D Female 53.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
68795422 Antisense, RP_041122_02_E04, Mouse strain C57BL/6J (56 days, male) 1.6

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