MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.9 nTPM
HPA Brain:17.3 nTPM
GTEx:18.9 nTPM
FANTOM5:59.0 Scaled Tags Per Million
Pig:22.9 nTPM
Mouse:17.8 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 17.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.0
2019 Male, age 18, unknown 18.8
1870 Female, age 42, unknown 18.5
2411 Female, age 72, unknown 17.6
1830 Male, age 51, unknown 15.8
1833 Male, age 53, unknown 14.5
2828 Female, age 72, unknown 12.8
1827 Male, age 72, unknown 12.6
2219 Male, age 76, both hemispheres 11.3
2666 Male, age 74, left hemisphere 10.1
2586 Male, age 75, left hemisphere 8.3
Dorsal raphe nucleus
nTPM: 14.1
2750 Male, age 76, both hemispheres 17.0
2016 Female, age 72, unknown 14.6
2298 Female, age 72, unknown 13.5
1828 Male, age 53, unknown 13.2
2047 Male, age 72, unknown 12.0
Inferior colliculus
nTPM: 13.4
2097 Female, age 72, unknown 15.0
1890 Male, age 53, unknown 13.9
1848 Female, age 42, unknown 13.2
2849 Male, age 72, unknown 11.3
Median raphe nucleus
nTPM: 15.7
2220 Male, age 76, midline 15.7
Periaquaductal grey, anterior
nTPM: 13.6
2502 Female, age 75, unknown 14.8
1947 Male, age 18, unknown 14.1
1795 Male, age 51, unknown 11.9
Periaquaductal grey, dorsal
nTPM: 13.5
2850 Male, age 76, both hemispheres 16.8
2464 Female, age 72, unknown 12.8
1840 Male, age 53, unknown 12.4
1831 Male, age 72, unknown 12.2
Periaquaductal grey, lateral
nTPM: 12.5
2140 Male, age 76, both hemispheres 13.5
2272 Male, age 74, both hemispheres 12.1
2053 Male, age 18, unknown 11.9
Pretectal area
nTPM: 13.1
2273 Male, age 74, both hemispheres 18.8
1817 Female, age 42, unknown 14.6
2007 Male, age 72, unknown 13.7
2224 Female, age 72, unknown 13.5
2667 Female, age 75, unknown 13.4
2316 Male, age 76, right hemisphere 13.3
1815 Male, age 53, unknown 12.5
1944 Female, age 72, unknown 12.0
1816 Male, age 51, unknown 11.8
2825 Male, age 18, unknown 11.7
2407 Male, age 75, both hemispheres 9.2
Red nucleus
nTPM: 17.3
1821 Female, age 72, unknown 21.9
1954 Female, age 42, unknown 20.7
1865 Male, age 51, unknown 19.7
2725 Female, age 75, unknown 18.3
2823 Male, age 76, right hemisphere 18.1
1904 Male, age 53, unknown 17.9
2503 Female, age 72, unknown 17.7
2785 Male, age 18, unknown 17.2
2769 Male, age 72, unknown 17.0
2227 Male, age 72, unknown 16.1
2588 Male, age 74, left hemisphere 13.0
2584 Male, age 75, left hemisphere 10.0
Substantia nigra
nTPM: 13.7
2241 Male, age 72, unknown 17.4
1941 Male, age 53, unknown 15.7
1889 Female, age 72, unknown 15.2
1851 Male, age 51, unknown 14.3
2409 Female, age 72, unknown 13.6
2665 Male, age 74, both hemispheres 13.2
2699 Male, age 18, unknown 12.5
1916 Female, age 42, unknown 12.1
2590 Female, age 75, unknown 11.6
2583 Male, age 75, right hemisphere 11.3
Superior colliculus
nTPM: 13.0
1913 Female, age 42, unknown 18.0
1995 Male, age 72, unknown 15.9
2587 Male, age 74, left hemisphere 15.3
1895 Male, age 76, right hemisphere 15.0
1839 Male, age 51, unknown 12.5
2668 Female, age 75, unknown 12.2
1796 Male, age 53, unknown 11.5
2261 Male, age 18, unknown 11.0
2087 Female, age 72, unknown 10.9
2664 Male, age 75, both hemispheres 8.0
Ventral tegmental area
nTPM: 14.7
2223 Female, age 72, unknown 17.3
2410 Female, age 72, unknown 16.6
2218 Male, age 76, both hemispheres 14.4
2021 Male, age 53, unknown 14.3
1942 Male, age 51, unknown 13.0
1915 Female, age 42, unknown 12.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 18.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.9
Samples: 183

Max nTPM: 44.1
Min nTPM: 5.1
Std nTPM: 6.4
Median nTPM: 18.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 44.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 39.7
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 34.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 33.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 32.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 31.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 31.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 30.9
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 30.5
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 29.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 29.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 59.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.0
FF:10158-103A5 76 years, female 59.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 22.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.8
Samples: 4

Max nTPM: 24.2
Min nTPM: 18.9
Sample A Female 24.2
Sample B Female 23.3
Sample C Male 20.6
Sample D Male 18.9
Midbrain
nTPM: 20.7
Samples: 4

Max nTPM: 29.8
Min nTPM: 15.0
Sample A Female 29.8
Sample B Female 20.0
Sample C Male 18.1
Sample D Male 15.0
Periaqueductal gray
nTPM: 22.9
Samples: 3

Max nTPM: 25.8
Min nTPM: 20.8
Sample B Female 20.8
Sample C Male 25.8
Sample D Male 22.1
Superior colliculi
nTPM: 20.1
Samples: 4

Max nTPM: 22.8
Min nTPM: 16.8
Sample A Female 19.8
Sample B Female 22.8
Sample C Male 20.8
Sample D Male 16.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 17.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.8
Samples: 4

Max nTPM: 19.6
Min nTPM: 13.7
Sample A Male 18.4
Sample B Male 13.7
Sample C Female 19.6
Sample D Female 19.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
68522510 Antisense, RP_050118_02_B10, Mouse strain C57BL/6J (56 days, male) 0.4

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