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  • LAMTOR1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:139.9 nTPM
HPA Brain:113.6 nTPM
GTEx:139.9 nTPM
FANTOM5:109.9 Scaled Tags Per Million
Pig:75.7 nTPM
Mouse:139.4 nTPM
Allen mouse:6.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

113.6
Sample id Sample description nTPM
Amygdala
nTPM: 105.2
2695 Female, age 67, right hemisphere 127.4
2814 Male, age 76, right hemisphere 111.4
2514 Male, age 75, right hemisphere 103.0
2517 Female, age 94, left hemisphere 95.0
1987 Female, age 91, left hemisphere 89.3
Basal amygdala
nTPM: 102.7
2609 Male, age 75, right hemisphere 117.8
2827 Female, age 67, right hemisphere 113.8
2685 Female, age 94, left hemisphere 102.0
2243 Female, age 91, right hemisphere 97.8
2110 Male, age 80, left hemisphere 93.8
1955 Male, age 76, both hemispheres 91.0
Central amygdala
nTPM: 110.6
2826 Female, age 94, left hemisphere 143.7
2515 Male, age 75, right hemisphere 113.6
1905 Male, age 76, both hemispheres 106.3
2239 Male, age 80, left hemisphere 95.7
2701 Female, age 91, right hemisphere 93.5
Corticomedial amygdala
nTPM: 91.7
2428 Male, age 75, right hemisphere 110.4
2829 Male, age 80, left hemisphere 100.3
2535 Female, age 67, right hemisphere 89.8
2242 Female, age 91, right hemisphere 88.1
2429 Female, age 94, left hemisphere 83.1
2240 Male, age 76, both hemispheres 78.4
Lateral amygdala
nTPM: 113.6
2830 Female, age 67, right hemisphere 144.2
2516 Male, age 75, right hemisphere 119.5
2534 Female, age 94, left hemisphere 114.4
1883 Male, age 76, both hemispheres 105.6
2256 Male, age 80, left hemisphere 104.0
2255 Female, age 91, right hemisphere 94.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

139.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 139.9
Samples: 181

Max nTPM: 312.5
Min nTPM: 81.1
Std nTPM: 32.3
Median nTPM: 135.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 312.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 266.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 236.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 230.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 223.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 217.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 209.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 194.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 193.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 192.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 189.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 188.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 186.4
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 181.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 180.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 179.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 176.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 176.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 174.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 173.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 173.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 172.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 171.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 171.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 169.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 168.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 168.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 168.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 166.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 166.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 166.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 165.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 164.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 163.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 163.1
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 162.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 161.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 160.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 159.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 158.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 157.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 155.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 155.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 155.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 155.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 154.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 154.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 154.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 154.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 153.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 152.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 151.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 150.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 149.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 149.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 149.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 148.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 148.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 148.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 147.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 147.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 147.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 147.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 146.7
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 146.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 146.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 144.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 144.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 144.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 144.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 144.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 143.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 143.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 143.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 142.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 139.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 139.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 139.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 139.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 139.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 139.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 138.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 138.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 138.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 138.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 138.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 138.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 138.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 136.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 135.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 135.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 134.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 134.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 133.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 133.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 133.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 133.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 133.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 132.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 131.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 131.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 131.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 131.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 131.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 130.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 129.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 129.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 129.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 128.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 128.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 128.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 128.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 127.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 127.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 127.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 127.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 126.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 125.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 125.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 125.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 124.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 124.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 124.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 124.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 123.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 123.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 123.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 123.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 122.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 122.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 121.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 121.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 121.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 120.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 119.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 118.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 118.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 118.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 118.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 115.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 115.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 115.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 114.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 114.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 113.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 113.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 113.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 113.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 113.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 112.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 111.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 110.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 110.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 110.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 108.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 107.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 106.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 106.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 106.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 106.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 105.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 105.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 103.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 103.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 103.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 102.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 102.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 101.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 100.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 100.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 99.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 99.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 98.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 98.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 97.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 96.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 93.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 90.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 86.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 82.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 81.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

109.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 109.9
FF:10151-102I7 76 years, female 109.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

75.7
Pig sample Sample description nTPM
Amygdala
nTPM: 75.7
Samples: 4

Max nTPM: 106.5
Min nTPM: 61.7
Sample A Female 106.5
Sample B Female 63.5
Sample C Male 71.0
Sample D Male 61.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

139.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 139.4
Samples: 4

Max nTPM: 150.3
Min nTPM: 128.9
Sample A Male 128.9
Sample B Male 142.3
Sample C Female 150.3
Sample D Female 136.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.4
72283773 Antisense, RP_051019_02_B04, Mouse strain C57BL/6J (56 days, male) 11.9
74736207 Antisense, RP_060302_02_E06, Mouse strain C57BL/6J (56 days, male) 0.9

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