MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.2 nTPM
HPA Brain:71.9 nTPM
GTEx:26.2 nTPM
FANTOM5:46.8 Scaled Tags Per Million
Pig:55.1 nTPM
Mouse:46.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 71.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 66.0
2666 Male, age 74, left hemisphere 112.3
2586 Male, age 75, left hemisphere 83.2
1827 Male, age 72, unknown 69.8
1833 Male, age 53, unknown 59.7
1870 Female, age 42, unknown 59.0
2828 Female, age 72, unknown 58.4
2411 Female, age 72, unknown 58.2
2019 Male, age 18, unknown 56.0
2219 Male, age 76, both hemispheres 53.3
1830 Male, age 51, unknown 49.8
Dorsal raphe nucleus
nTPM: 58.1
2298 Female, age 72, unknown 64.4
1828 Male, age 53, unknown 63.2
2047 Male, age 72, unknown 61.4
2750 Male, age 76, both hemispheres 51.3
2016 Female, age 72, unknown 50.1
Inferior colliculus
nTPM: 56.6
2849 Male, age 72, unknown 65.4
1848 Female, age 42, unknown 60.1
2097 Female, age 72, unknown 51.8
1890 Male, age 53, unknown 49.3
Median raphe nucleus
nTPM: 71.9
2220 Male, age 76, midline 71.9
Periaquaductal grey, anterior
nTPM: 66.3
1947 Male, age 18, unknown 68.7
1795 Male, age 51, unknown 67.5
2502 Female, age 75, unknown 62.8
Periaquaductal grey, dorsal
nTPM: 59.1
1840 Male, age 53, unknown 66.8
2850 Male, age 76, both hemispheres 64.0
1831 Male, age 72, unknown 53.7
2464 Female, age 72, unknown 51.9
Periaquaductal grey, lateral
nTPM: 48.9
2053 Male, age 18, unknown 54.1
2140 Male, age 76, both hemispheres 53.6
2272 Male, age 74, both hemispheres 39.2
Pretectal area
nTPM: 59.9
1816 Male, age 51, unknown 75.0
1817 Female, age 42, unknown 74.9
1944 Female, age 72, unknown 71.5
2007 Male, age 72, unknown 70.5
1815 Male, age 53, unknown 68.2
2825 Male, age 18, unknown 60.3
2224 Female, age 72, unknown 58.5
2667 Female, age 75, unknown 51.4
2407 Male, age 75, both hemispheres 48.1
2316 Male, age 76, right hemisphere 43.6
2273 Male, age 74, both hemispheres 37.2
Red nucleus
nTPM: 53.3
2584 Male, age 75, left hemisphere 77.2
2588 Male, age 74, left hemisphere 65.5
2725 Female, age 75, unknown 64.7
1821 Female, age 72, unknown 56.4
2785 Male, age 18, unknown 55.0
1954 Female, age 42, unknown 51.5
2769 Male, age 72, unknown 50.0
2227 Male, age 72, unknown 48.2
1865 Male, age 51, unknown 48.1
1904 Male, age 53, unknown 45.4
2503 Female, age 72, unknown 43.4
2823 Male, age 76, right hemisphere 34.1
Substantia nigra
nTPM: 65.3
2665 Male, age 74, both hemispheres 79.0
1916 Female, age 42, unknown 78.9
1941 Male, age 53, unknown 68.9
2583 Male, age 75, right hemisphere 68.7
1851 Male, age 51, unknown 66.0
1889 Female, age 72, unknown 63.9
2241 Male, age 72, unknown 61.9
2409 Female, age 72, unknown 61.1
2699 Male, age 18, unknown 53.7
2590 Female, age 75, unknown 51.1
Superior colliculus
nTPM: 57.4
2668 Female, age 75, unknown 69.7
2087 Female, age 72, unknown 64.1
2261 Male, age 18, unknown 62.4
2664 Male, age 75, both hemispheres 60.5
1796 Male, age 53, unknown 60.4
1839 Male, age 51, unknown 58.1
2587 Male, age 74, left hemisphere 56.6
1895 Male, age 76, right hemisphere 51.1
1995 Male, age 72, unknown 45.3
1913 Female, age 42, unknown 45.2
Ventral tegmental area
nTPM: 60.0
1915 Female, age 42, unknown 69.9
2218 Male, age 76, both hemispheres 62.5
1942 Male, age 51, unknown 61.3
2410 Female, age 72, unknown 58.6
2223 Female, age 72, unknown 56.5
2021 Male, age 53, unknown 51.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 26.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.2
Samples: 183

Max nTPM: 62.4
Min nTPM: 14.3
Std nTPM: 8.2
Median nTPM: 24.4
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 62.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 50.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 48.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 47.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 46.7
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 44.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 42.7
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 41.4
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 41.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 41.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 40.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 46.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 46.8
FF:10158-103A5 76 years, female 46.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 55.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 54.0
Samples: 4

Max nTPM: 68.5
Min nTPM: 41.5
Sample A Female 60.3
Sample B Female 45.5
Sample C Male 68.5
Sample D Male 41.5
Midbrain
nTPM: 53.4
Samples: 4

Max nTPM: 65.8
Min nTPM: 40.4
Sample A Female 47.7
Sample B Female 40.4
Sample C Male 65.8
Sample D Male 59.6
Periaqueductal gray
nTPM: 47.8
Samples: 3

Max nTPM: 54.7
Min nTPM: 41.9
Sample B Female 41.9
Sample C Male 54.7
Sample D Male 46.7
Superior colliculi
nTPM: 55.1
Samples: 4

Max nTPM: 60.4
Min nTPM: 48.8
Sample A Female 58.8
Sample B Female 48.8
Sample C Male 52.4
Sample D Male 60.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 46.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.0
Samples: 4

Max nTPM: 50.4
Min nTPM: 41.5
Sample A Male 41.5
Sample B Male 43.7
Sample C Female 48.4
Sample D Female 50.4

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