MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.7 nTPM
HPA Brain:40.4 nTPM
GTEx:26.7 nTPM
FANTOM5:54.5 Scaled Tags Per Million
Pig:29.3 nTPM
Mouse:19.0 nTPM
Allen mouse:4.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 40.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.9
1870 Female, age 42, unknown 43.8
2411 Female, age 72, unknown 40.8
2019 Male, age 18, unknown 40.0
1830 Male, age 51, unknown 39.9
2586 Male, age 75, left hemisphere 39.3
1833 Male, age 53, unknown 38.5
2828 Female, age 72, unknown 35.2
2666 Male, age 74, left hemisphere 31.6
1827 Male, age 72, unknown 30.8
2219 Male, age 76, both hemispheres 29.3
Dorsal raphe nucleus
nTPM: 33.2
2750 Male, age 76, both hemispheres 42.2
2016 Female, age 72, unknown 33.7
1828 Male, age 53, unknown 30.5
2298 Female, age 72, unknown 30.4
2047 Male, age 72, unknown 29.1
Inferior colliculus
nTPM: 31.7
1848 Female, age 42, unknown 33.4
1890 Male, age 53, unknown 31.9
2097 Female, age 72, unknown 31.3
2849 Male, age 72, unknown 30.1
Median raphe nucleus
nTPM: 31.5
2220 Male, age 76, midline 31.5
Periaquaductal grey, anterior
nTPM: 28.5
1947 Male, age 18, unknown 30.2
2502 Female, age 75, unknown 29.7
1795 Male, age 51, unknown 25.6
Periaquaductal grey, dorsal
nTPM: 29.2
2464 Female, age 72, unknown 31.0
1831 Male, age 72, unknown 30.0
2850 Male, age 76, both hemispheres 29.6
1840 Male, age 53, unknown 26.1
Periaquaductal grey, lateral
nTPM: 30.0
2140 Male, age 76, both hemispheres 31.2
2053 Male, age 18, unknown 29.9
2272 Male, age 74, both hemispheres 29.0
Pretectal area
nTPM: 31.1
2667 Female, age 75, unknown 35.0
2316 Male, age 76, right hemisphere 34.3
1815 Male, age 53, unknown 33.9
1817 Female, age 42, unknown 33.5
2407 Male, age 75, both hemispheres 31.6
2273 Male, age 74, both hemispheres 30.8
2825 Male, age 18, unknown 30.6
2007 Male, age 72, unknown 29.9
2224 Female, age 72, unknown 28.3
1944 Female, age 72, unknown 28.1
1816 Male, age 51, unknown 26.0
Red nucleus
nTPM: 40.4
1865 Male, age 51, unknown 47.8
1904 Male, age 53, unknown 45.0
2769 Male, age 72, unknown 44.6
1821 Female, age 72, unknown 44.0
2227 Male, age 72, unknown 42.0
1954 Female, age 42, unknown 41.3
2785 Male, age 18, unknown 41.0
2823 Male, age 76, right hemisphere 39.9
2503 Female, age 72, unknown 36.6
2588 Male, age 74, left hemisphere 36.5
2725 Female, age 75, unknown 33.8
2584 Male, age 75, left hemisphere 32.6
Substantia nigra
nTPM: 33.0
1851 Male, age 51, unknown 36.7
2409 Female, age 72, unknown 34.9
2590 Female, age 75, unknown 34.6
2583 Male, age 75, right hemisphere 34.2
2699 Male, age 18, unknown 33.1
1889 Female, age 72, unknown 32.7
2665 Male, age 74, both hemispheres 32.2
2241 Male, age 72, unknown 31.8
1941 Male, age 53, unknown 30.1
1916 Female, age 42, unknown 29.8
Superior colliculus
nTPM: 33.5
1913 Female, age 42, unknown 46.7
1995 Male, age 72, unknown 41.9
2587 Male, age 74, left hemisphere 33.6
1796 Male, age 53, unknown 32.9
1839 Male, age 51, unknown 32.4
1895 Male, age 76, right hemisphere 32.4
2668 Female, age 75, unknown 31.8
2087 Female, age 72, unknown 29.1
2261 Male, age 18, unknown 28.2
2664 Male, age 75, both hemispheres 26.5
Ventral tegmental area
nTPM: 35.7
2223 Female, age 72, unknown 45.9
2021 Male, age 53, unknown 36.0
2410 Female, age 72, unknown 34.9
1942 Male, age 51, unknown 33.0
2218 Male, age 76, both hemispheres 33.0
1915 Female, age 42, unknown 31.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 26.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.7
Samples: 183

Max nTPM: 115.4
Min nTPM: 12.3
Std nTPM: 12.3
Median nTPM: 24.2
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 115.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 94.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 71.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 63.8
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 54.2
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 53.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 49.3
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 46.6
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 45.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 45.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 43.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 54.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 54.5
FF:10158-103A5 76 years, female 54.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 29.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.3
Samples: 4

Max nTPM: 32.3
Min nTPM: 27.1
Sample A Female 29.8
Sample B Female 28.0
Sample C Male 27.1
Sample D Male 32.3
Midbrain
nTPM: 28.7
Samples: 4

Max nTPM: 46.5
Min nTPM: 20.0
Sample A Female 46.5
Sample B Female 23.8
Sample C Male 24.3
Sample D Male 20.0
Periaqueductal gray
nTPM: 23.0
Samples: 3

Max nTPM: 25.8
Min nTPM: 21.2
Sample B Female 21.9
Sample C Male 25.8
Sample D Male 21.2
Superior colliculi
nTPM: 27.2
Samples: 4

Max nTPM: 30.1
Min nTPM: 25.3
Sample A Female 30.1
Sample B Female 27.4
Sample C Male 25.3
Sample D Male 26.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 19.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.0
Samples: 4

Max nTPM: 20.2
Min nTPM: 18.2
Sample A Male 20.2
Sample B Male 18.4
Sample C Female 19.1
Sample D Female 18.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.0
69289423 Antisense, RP_050407_03_B10, Mouse strain C57BL/6J (56 days, male) 4.0

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo