MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.4 nTPM
HPA Brain:64.2 nTPM
GTEx:29.4 nTPM
FANTOM5:44.7 Scaled Tags Per Million
Pig:58.4 nTPM
Mouse:30.9 nTPM
Allen mouse:5.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 64.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.6
1833 Male, age 53, unknown 60.1
2586 Male, age 75, left hemisphere 58.7
1830 Male, age 51, unknown 56.4
2828 Female, age 72, unknown 56.0
1870 Female, age 42, unknown 55.5
1827 Male, age 72, unknown 55.3
2666 Male, age 74, left hemisphere 54.2
2219 Male, age 76, both hemispheres 51.1
2411 Female, age 72, unknown 49.9
2019 Male, age 18, unknown 48.9
Dorsal raphe nucleus
nTPM: 49.3
2016 Female, age 72, unknown 52.3
2750 Male, age 76, both hemispheres 50.7
1828 Male, age 53, unknown 50.5
2047 Male, age 72, unknown 47.9
2298 Female, age 72, unknown 45.4
Inferior colliculus
nTPM: 53.7
2849 Male, age 72, unknown 71.5
1848 Female, age 42, unknown 52.2
1890 Male, age 53, unknown 48.2
2097 Female, age 72, unknown 43.1
Median raphe nucleus
nTPM: 61.3
2220 Male, age 76, midline 61.3
Periaquaductal grey, anterior
nTPM: 53.9
1947 Male, age 18, unknown 55.3
2502 Female, age 75, unknown 54.2
1795 Male, age 51, unknown 52.3
Periaquaductal grey, dorsal
nTPM: 56.2
2850 Male, age 76, both hemispheres 77.7
1831 Male, age 72, unknown 51.8
1840 Male, age 53, unknown 48.8
2464 Female, age 72, unknown 46.4
Periaquaductal grey, lateral
nTPM: 64.2
2140 Male, age 76, both hemispheres 72.2
2272 Male, age 74, both hemispheres 62.0
2053 Male, age 18, unknown 58.3
Pretectal area
nTPM: 55.8
2407 Male, age 75, both hemispheres 65.2
2667 Female, age 75, unknown 57.6
1815 Male, age 53, unknown 57.3
1816 Male, age 51, unknown 56.2
2316 Male, age 76, right hemisphere 56.0
1817 Female, age 42, unknown 55.6
2825 Male, age 18, unknown 55.1
2273 Male, age 74, both hemispheres 55.0
2224 Female, age 72, unknown 53.2
2007 Male, age 72, unknown 52.2
1944 Female, age 72, unknown 50.1
Red nucleus
nTPM: 55.0
2725 Female, age 75, unknown 59.8
2785 Male, age 18, unknown 58.0
1904 Male, age 53, unknown 57.3
2227 Male, age 72, unknown 57.0
1865 Male, age 51, unknown 56.6
2584 Male, age 75, left hemisphere 56.5
2769 Male, age 72, unknown 54.5
2588 Male, age 74, left hemisphere 53.2
2823 Male, age 76, right hemisphere 52.9
1821 Female, age 72, unknown 52.2
2503 Female, age 72, unknown 51.4
1954 Female, age 42, unknown 50.7
Substantia nigra
nTPM: 53.6
2409 Female, age 72, unknown 63.3
2699 Male, age 18, unknown 62.4
2583 Male, age 75, right hemisphere 54.7
1941 Male, age 53, unknown 53.9
2665 Male, age 74, both hemispheres 53.6
1916 Female, age 42, unknown 52.3
2590 Female, age 75, unknown 51.9
1851 Male, age 51, unknown 51.7
1889 Female, age 72, unknown 47.8
2241 Male, age 72, unknown 44.7
Superior colliculus
nTPM: 54.7
2664 Male, age 75, both hemispheres 60.6
1913 Female, age 42, unknown 58.6
1839 Male, age 51, unknown 57.8
1796 Male, age 53, unknown 54.8
1895 Male, age 76, right hemisphere 53.8
1995 Male, age 72, unknown 53.5
2261 Male, age 18, unknown 53.3
2587 Male, age 74, left hemisphere 53.1
2087 Female, age 72, unknown 51.6
2668 Female, age 75, unknown 49.5
Ventral tegmental area
nTPM: 51.7
2223 Female, age 72, unknown 60.1
2218 Male, age 76, both hemispheres 54.1
2021 Male, age 53, unknown 51.6
1915 Female, age 42, unknown 49.4
1942 Male, age 51, unknown 48.0
2410 Female, age 72, unknown 47.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 29.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.4
Samples: 183

Max nTPM: 48.4
Min nTPM: 18.6
Std nTPM: 4.8
Median nTPM: 28.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 48.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 46.9
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 45.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 44.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 41.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 39.9
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 39.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 38.4
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 38.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 38.0
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 37.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 44.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.7
FF:10158-103A5 76 years, female 44.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 58.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.1
Samples: 4

Max nTPM: 71.5
Min nTPM: 51.1
Sample A Female 51.1
Sample B Female 53.1
Sample C Male 56.8
Sample D Male 71.5
Midbrain
nTPM: 58.5
Samples: 4

Max nTPM: 64.3
Min nTPM: 53.2
Sample A Female 64.3
Sample B Female 53.2
Sample C Male 55.7
Sample D Male 60.6
Periaqueductal gray
nTPM: 57.5
Samples: 3

Max nTPM: 58.8
Min nTPM: 55.4
Sample B Female 55.4
Sample C Male 58.8
Sample D Male 58.2
Superior colliculi
nTPM: 55.8
Samples: 4

Max nTPM: 60.9
Min nTPM: 53.1
Sample A Female 54.8
Sample B Female 53.1
Sample C Male 54.2
Sample D Male 60.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 30.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.9
Samples: 4

Max nTPM: 33.7
Min nTPM: 28.7
Sample A Male 32.1
Sample B Male 28.9
Sample C Female 33.7
Sample D Female 28.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.4
70445502 Antisense, RP_050614_04_A03, Mouse strain C57BL/6J (56 days, male) 5.4

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