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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:17.4 nTPM
HPA Brain:23.1 nTPM
GTEx:17.4 nTPM
FANTOM5:29.2 Scaled Tags Per Million
Pig:10.5 nTPM
Mouse:17.3 nTPM
Allen mouse:1.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

23.1
Sample id Sample description nTPM
Amygdala
nTPM: 18.6
2695 Female, age 67, right hemisphere 34.7
2814 Male, age 76, right hemisphere 21.4
2514 Male, age 75, right hemisphere 13.7
2517 Female, age 94, left hemisphere 13.4
1987 Female, age 91, left hemisphere 9.7
Basal amygdala
nTPM: 15.7
2827 Female, age 67, right hemisphere 28.8
2609 Male, age 75, right hemisphere 20.1
2685 Female, age 94, left hemisphere 12.6
1955 Male, age 76, both hemispheres 12.3
2110 Male, age 80, left hemisphere 10.9
2243 Female, age 91, right hemisphere 9.3
Central amygdala
nTPM: 19.3
2826 Female, age 94, left hemisphere 37.8
2515 Male, age 75, right hemisphere 19.2
1905 Male, age 76, both hemispheres 18.0
2239 Male, age 80, left hemisphere 11.7
2701 Female, age 91, right hemisphere 9.6
Corticomedial amygdala
nTPM: 12.1
2428 Male, age 75, right hemisphere 19.2
2535 Female, age 67, right hemisphere 17.2
2240 Male, age 76, both hemispheres 9.7
2829 Male, age 80, left hemisphere 9.7
2429 Female, age 94, left hemisphere 9.2
2242 Female, age 91, right hemisphere 7.4
Lateral amygdala
nTPM: 23.1
2830 Female, age 67, right hemisphere 49.2
2534 Female, age 94, left hemisphere 27.6
2516 Male, age 75, right hemisphere 24.1
1883 Male, age 76, both hemispheres 16.1
2255 Female, age 91, right hemisphere 11.0
2256 Male, age 80, left hemisphere 10.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

17.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 17.4
Samples: 181

Max nTPM: 61.1
Min nTPM: 1.7
Std nTPM: 10.9
Median nTPM: 14.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 61.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 52.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 50.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 48.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 45.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 44.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 44.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 42.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 42.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 41.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 40.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 36.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 36.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 36.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 36.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 35.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 34.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 34.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 33.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 33.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 32.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 30.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 30.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 29.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 29.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 29.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 29.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 27.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 27.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 26.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 25.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 25.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 25.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 25.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 24.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 23.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 23.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 23.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 23.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 23.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 23.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 23.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 22.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 22.5
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 22.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 21.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 21.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 20.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 20.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 20.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 20.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 19.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 19.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 19.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 19.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 19.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 19.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 19.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 19.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 19.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 18.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 18.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 18.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 18.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 18.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 17.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 17.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 17.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 17.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 17.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 17.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 17.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 16.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 16.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 16.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 16.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 16.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 16.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 16.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 16.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 15.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 15.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 15.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 15.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 15.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 15.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 15.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 15.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 15.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 14.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 14.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 14.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 14.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 14.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 14.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 14.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 14.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 14.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 13.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 13.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 13.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 13.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 13.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 13.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 13.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 13.2
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 13.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 13.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 12.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 12.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 12.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 12.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 12.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 12.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 12.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 12.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 12.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 12.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 12.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 11.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 11.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 11.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 11.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 10.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 10.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 10.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 10.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 10.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 10.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 10.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 10.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 10.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 10.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 10.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 10.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 9.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 9.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 9.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 9.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 9.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 9.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 9.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 9.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 9.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 9.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 9.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 8.9
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 8.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 8.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 8.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 8.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 8.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 8.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 8.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 8.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 8.1
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 8.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 7.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 7.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 7.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 7.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 6.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 6.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 5.9
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 5.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 5.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 5.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 5.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 4.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 4.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 4.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 4.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 3.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 3.7
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 3.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 3.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 2.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 2.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

29.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 29.2
FF:10151-102I7 76 years, female 29.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

10.5
Pig sample Sample description nTPM
Amygdala
nTPM: 10.5
Samples: 4

Max nTPM: 13.1
Min nTPM: 8.1
Sample A Female 10.8
Sample B Female 10.1
Sample C Male 13.1
Sample D Male 8.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

17.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 17.3
Samples: 4

Max nTPM: 22.5
Min nTPM: 13.0
Sample A Male 13.0
Sample B Male 16.3
Sample C Female 22.5
Sample D Female 17.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.7
69262331 Antisense, RP_050303_02_B01, Mouse strain C57BL/6J (56 days, male) 1.7

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