MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:142.5 nTPM
HPA Brain:43.0 nTPM
GTEx:142.5 nTPM
FANTOM5:104.9 Scaled Tags Per Million
Pig:208.7 nTPM
Mouse:14.0 nTPM
Allen mouse:1.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 43.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.8
2019 Male, age 18, unknown 41.3
2666 Male, age 74, left hemisphere 39.8
1830 Male, age 51, unknown 36.9
1870 Female, age 42, unknown 34.2
2411 Female, age 72, unknown 33.9
1833 Male, age 53, unknown 33.5
2828 Female, age 72, unknown 28.0
2586 Male, age 75, left hemisphere 27.2
1827 Male, age 72, unknown 22.0
2219 Male, age 76, both hemispheres 21.2
Dorsal raphe nucleus
nTPM: 27.9
2016 Female, age 72, unknown 32.2
2047 Male, age 72, unknown 30.1
2750 Male, age 76, both hemispheres 28.5
1828 Male, age 53, unknown 24.5
2298 Female, age 72, unknown 24.0
Inferior colliculus
nTPM: 33.2
1890 Male, age 53, unknown 67.8
2097 Female, age 72, unknown 22.9
2849 Male, age 72, unknown 21.9
1848 Female, age 42, unknown 20.1
Median raphe nucleus
nTPM: 35.7
2220 Male, age 76, midline 35.7
Periaquaductal grey, anterior
nTPM: 26.3
1795 Male, age 51, unknown 28.4
2502 Female, age 75, unknown 26.5
1947 Male, age 18, unknown 24.0
Periaquaductal grey, dorsal
nTPM: 23.6
1831 Male, age 72, unknown 33.6
2464 Female, age 72, unknown 26.4
2850 Male, age 76, both hemispheres 20.8
1840 Male, age 53, unknown 13.7
Periaquaductal grey, lateral
nTPM: 25.7
2272 Male, age 74, both hemispheres 31.8
2053 Male, age 18, unknown 23.3
2140 Male, age 76, both hemispheres 22.0
Pretectal area
nTPM: 23.8
2316 Male, age 76, right hemisphere 31.8
2224 Female, age 72, unknown 27.5
2825 Male, age 18, unknown 27.3
1817 Female, age 42, unknown 26.6
1815 Male, age 53, unknown 26.0
1944 Female, age 72, unknown 23.5
2273 Male, age 74, both hemispheres 22.2
2667 Female, age 75, unknown 21.3
2007 Male, age 72, unknown 21.0
2407 Male, age 75, both hemispheres 17.7
1816 Male, age 51, unknown 17.1
Red nucleus
nTPM: 39.3
2769 Male, age 72, unknown 47.3
2584 Male, age 75, left hemisphere 45.7
2785 Male, age 18, unknown 43.9
2823 Male, age 76, right hemisphere 43.8
1865 Male, age 51, unknown 43.5
2588 Male, age 74, left hemisphere 42.9
2227 Male, age 72, unknown 42.3
1904 Male, age 53, unknown 37.2
2503 Female, age 72, unknown 35.1
1954 Female, age 42, unknown 30.9
1821 Female, age 72, unknown 30.2
2725 Female, age 75, unknown 28.7
Substantia nigra
nTPM: 29.7
2665 Male, age 74, both hemispheres 58.3
2590 Female, age 75, unknown 40.9
1851 Male, age 51, unknown 34.7
2583 Male, age 75, right hemisphere 30.4
2699 Male, age 18, unknown 24.2
2241 Male, age 72, unknown 23.8
1889 Female, age 72, unknown 22.7
2409 Female, age 72, unknown 22.6
1916 Female, age 42, unknown 19.8
1941 Male, age 53, unknown 19.4
Superior colliculus
nTPM: 29.6
2087 Female, age 72, unknown 45.9
1913 Female, age 42, unknown 40.8
1995 Male, age 72, unknown 32.1
2587 Male, age 74, left hemisphere 30.6
2668 Female, age 75, unknown 28.7
1895 Male, age 76, right hemisphere 28.3
1796 Male, age 53, unknown 24.8
1839 Male, age 51, unknown 24.3
2261 Male, age 18, unknown 22.4
2664 Male, age 75, both hemispheres 18.4
Ventral tegmental area
nTPM: 43.0
2218 Male, age 76, both hemispheres 52.5
2021 Male, age 53, unknown 47.5
1915 Female, age 42, unknown 47.0
1942 Male, age 51, unknown 38.3
2223 Female, age 72, unknown 36.3
2410 Female, age 72, unknown 36.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 142.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 142.5
Samples: 183

Max nTPM: 5358.9
Min nTPM: 14.1
Std nTPM: 445.5
Median nTPM: 80.2
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 5358.9
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 2972.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 383.7
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 374.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 320.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 312.8
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 296.0
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 259.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 245.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 231.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 224.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 104.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 104.9
FF:10158-103A5 76 years, female 104.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 208.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 208.7
Samples: 4

Max nTPM: 568.4
Min nTPM: 45.6
Sample A Female 132.3
Sample B Female 568.4
Sample C Male 45.6
Sample D Male 88.5
Midbrain
nTPM: 56.0
Samples: 4

Max nTPM: 81.0
Min nTPM: 24.4
Sample A Female 81.0
Sample B Female 58.1
Sample C Male 60.4
Sample D Male 24.4
Periaqueductal gray
nTPM: 18.7
Samples: 3

Max nTPM: 25.5
Min nTPM: 11.1
Sample B Female 25.5
Sample C Male 19.6
Sample D Male 11.1
Superior colliculi
nTPM: 132.9
Samples: 4

Max nTPM: 256.2
Min nTPM: 57.1
Sample A Female 133.9
Sample B Female 256.2
Sample C Male 57.1
Sample D Male 84.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 14.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.0
Samples: 4

Max nTPM: 17.6
Min nTPM: 9.6
Sample A Male 17.2
Sample B Male 17.6
Sample C Female 9.6
Sample D Female 11.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
68443116 Antisense, RP_050111_01_D06, Mouse strain C57BL/6J (56 days, male) 1.5

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