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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1239.5 nTPM
HPA Brain:501.6 nTPM
GTEx:1239.5 nTPM
FANTOM5:361.6 Scaled Tags Per Million
Pig:264.1 nTPM
Mouse:764.3 nTPM
Allen mouse:7.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

501.6
Sample id Sample description nTPM
Amygdala
nTPM: 482.8
2695 Female, age 67, right hemisphere 580.1
2514 Male, age 75, right hemisphere 496.4
2517 Female, age 94, left hemisphere 462.0
2814 Male, age 76, right hemisphere 445.1
1987 Female, age 91, left hemisphere 430.2
Basal amygdala
nTPM: 437.1
2827 Female, age 67, right hemisphere 588.9
2609 Male, age 75, right hemisphere 527.7
2110 Male, age 80, left hemisphere 410.3
2685 Female, age 94, left hemisphere 400.2
2243 Female, age 91, right hemisphere 350.0
1955 Male, age 76, both hemispheres 345.5
Central amygdala
nTPM: 479.1
2826 Female, age 94, left hemisphere 761.5
2515 Male, age 75, right hemisphere 518.7
1905 Male, age 76, both hemispheres 403.3
2239 Male, age 80, left hemisphere 368.9
2701 Female, age 91, right hemisphere 343.4
Corticomedial amygdala
nTPM: 389.5
2428 Male, age 75, right hemisphere 478.2
2829 Male, age 80, left hemisphere 428.5
2535 Female, age 67, right hemisphere 418.7
2429 Female, age 94, left hemisphere 363.5
2242 Female, age 91, right hemisphere 338.8
2240 Male, age 76, both hemispheres 309.0
Lateral amygdala
nTPM: 501.6
2830 Female, age 67, right hemisphere 750.7
2516 Male, age 75, right hemisphere 603.8
2534 Female, age 94, left hemisphere 537.3
2256 Male, age 80, left hemisphere 415.5
2255 Female, age 91, right hemisphere 355.9
1883 Male, age 76, both hemispheres 346.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1239.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1239.5
Samples: 181

Max nTPM: 3559.5
Min nTPM: 658.1
Std nTPM: 428.8
Median nTPM: 1169.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 3559.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2967.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2708.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 2685.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2659.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2536.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2452.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2160.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2120.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 2086.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1941.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 1853.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1812.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1803.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 1782.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1753.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1732.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1665.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1634.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 1625.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1623.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1590.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1575.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1538.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1510.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 1504.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 1498.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 1492.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1471.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1469.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1468.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1460.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 1448.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1447.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 1443.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1440.1
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 1437.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 1432.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 1430.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1423.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1406.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1402.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1395.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1386.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1385.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1384.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1370.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1364.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1364.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1356.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1355.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1344.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1338.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1328.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1327.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1324.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 1315.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1314.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 1311.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1307.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1304.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1300.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1298.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1287.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1282.1
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 1276.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1269.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1267.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1265.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1255.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1240.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1235.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1224.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1222.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1219.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1211.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1208.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1207.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1204.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 1201.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 1200.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1198.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1191.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1189.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1186.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1181.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1178.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1178.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1170.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1169.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1169.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1168.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 1156.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1152.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1151.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1148.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1141.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 1137.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1136.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 1129.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 1125.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 1117.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1111.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1110.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1105.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1100.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 1097.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1093.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 1089.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1089.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1082.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1079.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1075.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 1072.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1064.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1056.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 1054.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1041.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1026.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1025.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1022.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1017.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 1009.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 1004.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1004.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1002.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 998.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 997.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 996.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 993.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 988.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 987.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 981.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 975.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 972.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 965.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 962.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 942.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 942.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 939.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 939.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 931.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 921.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 918.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 916.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 906.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 904.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 903.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 901.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 900.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 898.4
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 887.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 882.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 882.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 878.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 878.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 874.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 872.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 872.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 871.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 869.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 862.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 859.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 849.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 845.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 844.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 844.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 836.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 802.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 801.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 788.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 782.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 765.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 763.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 749.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 726.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 724.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 707.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 678.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 658.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 658.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

361.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 361.6
FF:10151-102I7 76 years, female 361.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

264.1
Pig sample Sample description nTPM
Amygdala
nTPM: 264.1
Samples: 4

Max nTPM: 340.0
Min nTPM: 162.2
Sample A Female 340.0
Sample B Female 290.2
Sample C Male 264.0
Sample D Male 162.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

764.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 764.3
Samples: 4

Max nTPM: 825.6
Min nTPM: 716.1
Sample A Male 716.1
Sample B Male 782.0
Sample C Female 825.6
Sample D Female 733.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

7.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.3
74580990 Antisense, RP_060215_02_C09, Mouse strain C57BL/6J (56 days, male) 7.3

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