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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1091.5 nTPM
HPA Brain:586.6 nTPM
GTEx:1091.5 nTPM
FANTOM5:356.0 Scaled Tags Per Million
Pig:396.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

586.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 484.3
1981 Female, age 72, midline 597.8
2565 Male, age 75, midline 567.4
2048 Male, age 55, midline 431.6
2194 Female, age 79, both hemispheres 429.0
2816 Male, age 47, midline 395.9
Cervical spinal cord, dorsal horn
nTPM: 482.7
2173 Female, age 72, unknown 625.5
2069 Male, age 47, both hemispheres 561.1
2296 Male, age 66, both hemispheres 551.9
1877 Male, age 55, unknown 471.3
2297 Male, age 75, both hemispheres 357.3
2721 Male, age 90, both hemispheres 329.2
Cervical spinal cord, ventral horn
nTPM: 586.6
2480 Male, age 75, both hemispheres 757.5
2809 Male, age 90, both hemispheres 751.2
2098 Female, age 72, unknown 665.2
2295 Male, age 66, both hemispheres 513.9
2068 Male, age 55, unknown 482.8
2820 Female, age 79, both hemispheres 349.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1091.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1091.5
Samples: 204

Max nTPM: 2502.7
Min nTPM: 457.2
Std nTPM: 300.6
Median nTPM: 1047.5
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 2502.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 1936.6
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 1923.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 1916.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 1699.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 1665.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1647.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 1641.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1634.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1604.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1596.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 1590.7
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 1589.8
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 1586.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1580.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 1553.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1547.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1537.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1530.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1514.3
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 1496.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1492.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1491.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1482.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 1481.1
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 1465.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1464.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1450.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1447.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1440.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1433.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1417.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 1398.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1395.5
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 1380.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 1378.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1369.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1357.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1342.5
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 1332.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1332.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 1318.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1318.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1308.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1301.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1299.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 1282.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1277.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1271.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1268.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1262.1
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 1256.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1255.8
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 1246.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1241.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 1225.0
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 1222.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1213.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1213.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1211.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1198.3
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 1196.6
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 1195.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1190.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1189.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1186.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1186.5
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 1179.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 1177.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1171.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1164.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1158.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1156.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 1149.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1144.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1143.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 1137.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1131.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1128.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1128.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1124.3
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 1117.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1113.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 1111.6
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 1109.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1108.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1106.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1106.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 1100.9
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 1100.1
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 1099.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1098.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1098.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1096.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 1092.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1092.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1090.6
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 1089.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1086.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1076.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1058.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 1050.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1044.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1043.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1043.0
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 1040.6
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 1038.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1038.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1031.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1027.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 1024.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 1008.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1003.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 999.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 996.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 996.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 993.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 992.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 991.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 988.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 984.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 982.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 978.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 977.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 977.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 975.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 974.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 973.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 972.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 968.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 961.1
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 955.1
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 944.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 944.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 944.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 936.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 928.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 928.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 924.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 919.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 914.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 907.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 901.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 901.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 900.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 894.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 894.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 892.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 892.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 879.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 878.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 873.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 871.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 871.4
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 871.3
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 869.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 867.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 867.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 866.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 865.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 858.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 855.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 850.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 842.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 833.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 833.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 828.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 821.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 820.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 820.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 811.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 807.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 807.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 802.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 794.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 787.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 783.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 773.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 767.1
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 765.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 764.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 755.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 753.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 749.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 747.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 732.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 729.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 718.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 718.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 703.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 701.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 700.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 694.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 671.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 655.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 652.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 651.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 649.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 647.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 632.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 602.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 589.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 517.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 457.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

356.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 356.0
FF:10181-103D1 60 years, female 381.3
FF:10159-103A6 76 years, female 330.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

396.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 396.4
Samples: 4

Max nTPM: 548.2
Min nTPM: 308.7
Sample A Female 314.4
Sample B Female 414.3
Sample C Male 548.2
Sample D Male 308.7
Ventral spinal cord
nTPM: 366.8
Samples: 4

Max nTPM: 435.0
Min nTPM: 304.7
Sample A Female 304.7
Sample B Female 382.2
Sample C Male 435.0
Sample D Male 345.4

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