MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.9 nTPM
HPA Brain:92.5 nTPM
GTEx:26.9 nTPM
FANTOM5:54.9 Scaled Tags Per Million
Pig:70.1 nTPM
Mouse:26.1 nTPM
Allen mouse:5.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 92.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 80.5
2666 Male, age 74, left hemisphere 118.7
2019 Male, age 18, unknown 94.7
2586 Male, age 75, left hemisphere 87.8
1827 Male, age 72, unknown 84.3
2219 Male, age 76, both hemispheres 83.0
2828 Female, age 72, unknown 79.3
2411 Female, age 72, unknown 74.1
1833 Male, age 53, unknown 62.9
1830 Male, age 51, unknown 60.6
1870 Female, age 42, unknown 59.3
Dorsal raphe nucleus
nTPM: 69.1
1828 Male, age 53, unknown 84.1
2750 Male, age 76, both hemispheres 74.7
2047 Male, age 72, unknown 73.0
2298 Female, age 72, unknown 65.4
2016 Female, age 72, unknown 48.0
Inferior colliculus
nTPM: 58.8
1890 Male, age 53, unknown 64.7
2097 Female, age 72, unknown 59.9
1848 Female, age 42, unknown 58.7
2849 Male, age 72, unknown 51.9
Median raphe nucleus
nTPM: 74.8
2220 Male, age 76, midline 74.8
Periaquaductal grey, anterior
nTPM: 81.9
1947 Male, age 18, unknown 82.9
1795 Male, age 51, unknown 81.3
2502 Female, age 75, unknown 81.3
Periaquaductal grey, dorsal
nTPM: 51.2
2464 Female, age 72, unknown 58.2
1831 Male, age 72, unknown 51.2
2850 Male, age 76, both hemispheres 47.7
1840 Male, age 53, unknown 47.6
Periaquaductal grey, lateral
nTPM: 50.2
2272 Male, age 74, both hemispheres 54.7
2053 Male, age 18, unknown 49.4
2140 Male, age 76, both hemispheres 46.4
Pretectal area
nTPM: 79.6
2007 Male, age 72, unknown 114.9
1816 Male, age 51, unknown 112.5
1944 Female, age 72, unknown 111.2
1817 Female, age 42, unknown 99.5
1815 Male, age 53, unknown 89.3
2667 Female, age 75, unknown 75.4
2407 Male, age 75, both hemispheres 64.5
2224 Female, age 72, unknown 54.6
2825 Male, age 18, unknown 53.2
2273 Male, age 74, both hemispheres 51.5
2316 Male, age 76, right hemisphere 49.4
Red nucleus
nTPM: 69.3
2785 Male, age 18, unknown 86.0
1821 Female, age 72, unknown 76.6
2584 Male, age 75, left hemisphere 75.1
1954 Female, age 42, unknown 70.6
1865 Male, age 51, unknown 69.9
2823 Male, age 76, right hemisphere 68.4
2769 Male, age 72, unknown 68.0
2227 Male, age 72, unknown 67.6
2588 Male, age 74, left hemisphere 67.1
1904 Male, age 53, unknown 66.3
2503 Female, age 72, unknown 63.8
2725 Female, age 75, unknown 52.2
Substantia nigra
nTPM: 92.5
1916 Female, age 42, unknown 135.1
1851 Male, age 51, unknown 106.8
1941 Male, age 53, unknown 105.9
2665 Male, age 74, both hemispheres 97.5
1889 Female, age 72, unknown 95.9
2583 Male, age 75, right hemisphere 81.3
2590 Female, age 75, unknown 77.4
2241 Male, age 72, unknown 77.3
2409 Female, age 72, unknown 74.7
2699 Male, age 18, unknown 73.3
Superior colliculus
nTPM: 73.6
2668 Female, age 75, unknown 112.2
2087 Female, age 72, unknown 91.1
2261 Male, age 18, unknown 84.3
1796 Male, age 53, unknown 73.7
2664 Male, age 75, both hemispheres 69.7
1895 Male, age 76, right hemisphere 68.7
1913 Female, age 42, unknown 61.6
1839 Male, age 51, unknown 59.5
2587 Male, age 74, left hemisphere 59.4
1995 Male, age 72, unknown 56.0
Ventral tegmental area
nTPM: 78.4
2410 Female, age 72, unknown 98.7
2218 Male, age 76, both hemispheres 96.2
1915 Female, age 42, unknown 92.0
1942 Male, age 51, unknown 67.9
2223 Female, age 72, unknown 60.5
2021 Male, age 53, unknown 55.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 26.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.9
Samples: 183

Max nTPM: 84.0
Min nTPM: 9.1
Std nTPM: 14.4
Median nTPM: 22.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 84.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 74.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 68.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 67.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 62.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 60.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 59.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 56.5
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 56.1
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 55.2
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 54.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 54.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 54.9
FF:10158-103A5 76 years, female 54.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 70.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 65.5
Samples: 4

Max nTPM: 85.6
Min nTPM: 50.4
Sample A Female 85.6
Sample B Female 50.4
Sample C Male 75.4
Sample D Male 50.5
Midbrain
nTPM: 65.8
Samples: 4

Max nTPM: 106.2
Min nTPM: 47.9
Sample A Female 52.1
Sample B Female 47.9
Sample C Male 106.2
Sample D Male 56.8
Periaqueductal gray
nTPM: 41.6
Samples: 3

Max nTPM: 47.6
Min nTPM: 38.4
Sample B Female 38.7
Sample C Male 47.6
Sample D Male 38.4
Superior colliculi
nTPM: 70.1
Samples: 4

Max nTPM: 95.8
Min nTPM: 52.9
Sample A Female 67.5
Sample B Female 52.9
Sample C Male 95.8
Sample D Male 64.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 26.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.1
Samples: 4

Max nTPM: 27.4
Min nTPM: 24.9
Sample A Male 26.2
Sample B Male 24.9
Sample C Female 27.4
Sample D Female 25.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.6
69262336 Antisense, RP_050303_02_B06, Mouse strain C57BL/6J (56 days, male) 5.6

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