MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:71.9 nTPM
HPA Brain:67.9 nTPM
GTEx:71.9 nTPM
FANTOM5:104.3 Scaled Tags Per Million
Pig:27.1 nTPM
Mouse:30.4 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 67.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 55.5
2411 Female, age 72, unknown 66.5
1833 Male, age 53, unknown 62.9
1870 Female, age 42, unknown 62.6
1830 Male, age 51, unknown 62.2
2666 Male, age 74, left hemisphere 58.5
2019 Male, age 18, unknown 53.6
1827 Male, age 72, unknown 50.7
2586 Male, age 75, left hemisphere 50.4
2219 Male, age 76, both hemispheres 45.9
2828 Female, age 72, unknown 41.2
Dorsal raphe nucleus
nTPM: 56.5
2750 Male, age 76, both hemispheres 65.7
2047 Male, age 72, unknown 61.6
1828 Male, age 53, unknown 55.3
2016 Female, age 72, unknown 51.8
2298 Female, age 72, unknown 47.9
Inferior colliculus
nTPM: 40.5
1848 Female, age 42, unknown 42.9
1890 Male, age 53, unknown 41.7
2849 Male, age 72, unknown 40.6
2097 Female, age 72, unknown 37.1
Median raphe nucleus
nTPM: 67.9
2220 Male, age 76, midline 67.9
Periaquaductal grey, anterior
nTPM: 44.7
1947 Male, age 18, unknown 56.7
2502 Female, age 75, unknown 39.1
1795 Male, age 51, unknown 38.4
Periaquaductal grey, dorsal
nTPM: 42.9
2850 Male, age 76, both hemispheres 45.0
1831 Male, age 72, unknown 44.9
2464 Female, age 72, unknown 44.6
1840 Male, age 53, unknown 37.2
Periaquaductal grey, lateral
nTPM: 39.5
2053 Male, age 18, unknown 42.5
2272 Male, age 74, both hemispheres 39.3
2140 Male, age 76, both hemispheres 36.8
Pretectal area
nTPM: 47.1
1815 Male, age 53, unknown 55.6
2825 Male, age 18, unknown 52.9
2224 Female, age 72, unknown 51.5
1817 Female, age 42, unknown 50.7
2407 Male, age 75, both hemispheres 47.3
2007 Male, age 72, unknown 46.9
2316 Male, age 76, right hemisphere 45.0
1944 Female, age 72, unknown 43.5
2273 Male, age 74, both hemispheres 43.0
2667 Female, age 75, unknown 41.0
1816 Male, age 51, unknown 40.5
Red nucleus
nTPM: 62.7
1821 Female, age 72, unknown 75.7
2725 Female, age 75, unknown 75.0
2823 Male, age 76, right hemisphere 71.9
1865 Male, age 51, unknown 69.9
1954 Female, age 42, unknown 68.5
1904 Male, age 53, unknown 63.9
2503 Female, age 72, unknown 63.6
2588 Male, age 74, left hemisphere 57.2
2769 Male, age 72, unknown 55.6
2227 Male, age 72, unknown 54.7
2785 Male, age 18, unknown 50.3
2584 Male, age 75, left hemisphere 45.9
Substantia nigra
nTPM: 59.5
2241 Male, age 72, unknown 70.2
1916 Female, age 42, unknown 63.9
1851 Male, age 51, unknown 63.2
2409 Female, age 72, unknown 63.1
2699 Male, age 18, unknown 61.2
1941 Male, age 53, unknown 59.6
2665 Male, age 74, both hemispheres 56.0
2590 Female, age 75, unknown 55.8
1889 Female, age 72, unknown 52.5
2583 Male, age 75, right hemisphere 49.8
Superior colliculus
nTPM: 46.5
2587 Male, age 74, left hemisphere 57.7
1913 Female, age 42, unknown 56.6
1895 Male, age 76, right hemisphere 52.4
2668 Female, age 75, unknown 51.7
1839 Male, age 51, unknown 48.1
1995 Male, age 72, unknown 45.9
1796 Male, age 53, unknown 40.1
2664 Male, age 75, both hemispheres 39.1
2087 Female, age 72, unknown 38.1
2261 Male, age 18, unknown 35.8
Ventral tegmental area
nTPM: 59.4
2410 Female, age 72, unknown 67.1
2218 Male, age 76, both hemispheres 61.5
2223 Female, age 72, unknown 60.6
1915 Female, age 42, unknown 57.7
1942 Male, age 51, unknown 55.1
2021 Male, age 53, unknown 54.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 71.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 71.9
Samples: 183

Max nTPM: 142.4
Min nTPM: 35.0
Std nTPM: 17.5
Median nTPM: 70.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 142.4
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 123.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 121.7
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 121.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 113.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 112.2
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 110.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 104.4
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 104.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 103.1
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 102.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 104.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 104.3
FF:10158-103A5 76 years, female 104.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 27.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.1
Samples: 4

Max nTPM: 31.0
Min nTPM: 19.9
Sample A Female 30.9
Sample B Female 19.9
Sample C Male 26.7
Sample D Male 31.0
Midbrain
nTPM: 23.2
Samples: 4

Max nTPM: 30.4
Min nTPM: 16.6
Sample A Female 23.5
Sample B Female 30.4
Sample C Male 16.6
Sample D Male 22.2
Periaqueductal gray
nTPM: 23.4
Samples: 3

Max nTPM: 25.7
Min nTPM: 22.0
Sample B Female 25.7
Sample C Male 22.0
Sample D Male 22.5
Superior colliculi
nTPM: 20.7
Samples: 4

Max nTPM: 25.5
Min nTPM: 14.3
Sample A Female 25.5
Sample B Female 14.3
Sample C Male 20.2
Sample D Male 22.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 30.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.4
Samples: 4

Max nTPM: 32.1
Min nTPM: 27.2
Sample A Male 27.2
Sample B Male 31.2
Sample C Female 32.1
Sample D Female 31.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
71280907 Antisense, RP_050818_01_G12, Mouse strain C57BL/6J (56 days, male) 0.2

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