MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.7 nTPM
HPA Brain:40.6 nTPM
GTEx:35.7 nTPM
FANTOM5:33.2 Scaled Tags Per Million
Pig:13.4 nTPM
Mouse:9.4 nTPM
Allen mouse:3.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 40.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.9
2586 Male, age 75, left hemisphere 48.4
1830 Male, age 51, unknown 43.4
1870 Female, age 42, unknown 43.3
1833 Male, age 53, unknown 41.9
2411 Female, age 72, unknown 41.4
2219 Male, age 76, both hemispheres 40.3
2828 Female, age 72, unknown 38.5
1827 Male, age 72, unknown 34.6
2019 Male, age 18, unknown 34.2
2666 Male, age 74, left hemisphere 32.6
Dorsal raphe nucleus
nTPM: 33.1
2750 Male, age 76, both hemispheres 42.5
2016 Female, age 72, unknown 34.0
1828 Male, age 53, unknown 32.6
2298 Female, age 72, unknown 28.6
2047 Male, age 72, unknown 28.0
Inferior colliculus
nTPM: 31.3
2849 Male, age 72, unknown 36.0
1848 Female, age 42, unknown 30.6
1890 Male, age 53, unknown 30.1
2097 Female, age 72, unknown 28.6
Median raphe nucleus
nTPM: 38.2
2220 Male, age 76, midline 38.2
Periaquaductal grey, anterior
nTPM: 30.6
2502 Female, age 75, unknown 32.8
1947 Male, age 18, unknown 31.5
1795 Male, age 51, unknown 27.5
Periaquaductal grey, dorsal
nTPM: 29.8
2464 Female, age 72, unknown 30.6
2850 Male, age 76, both hemispheres 30.2
1831 Male, age 72, unknown 29.5
1840 Male, age 53, unknown 29.0
Periaquaductal grey, lateral
nTPM: 31.0
2053 Male, age 18, unknown 36.3
2140 Male, age 76, both hemispheres 28.9
2272 Male, age 74, both hemispheres 27.9
Pretectal area
nTPM: 33.6
2316 Male, age 76, right hemisphere 39.3
2667 Female, age 75, unknown 38.2
2825 Male, age 18, unknown 36.1
1815 Male, age 53, unknown 34.8
2224 Female, age 72, unknown 34.1
2407 Male, age 75, both hemispheres 33.7
1944 Female, age 72, unknown 33.0
1817 Female, age 42, unknown 32.7
1816 Male, age 51, unknown 29.9
2007 Male, age 72, unknown 29.8
2273 Male, age 74, both hemispheres 27.7
Red nucleus
nTPM: 40.6
2823 Male, age 76, right hemisphere 43.7
2725 Female, age 75, unknown 43.4
2503 Female, age 72, unknown 43.1
1821 Female, age 72, unknown 42.1
1904 Male, age 53, unknown 41.8
1865 Male, age 51, unknown 40.6
1954 Female, age 42, unknown 39.5
2227 Male, age 72, unknown 39.2
2769 Male, age 72, unknown 38.9
2588 Male, age 74, left hemisphere 38.5
2584 Male, age 75, left hemisphere 38.3
2785 Male, age 18, unknown 38.0
Substantia nigra
nTPM: 39.5
2241 Male, age 72, unknown 50.2
1851 Male, age 51, unknown 43.4
2699 Male, age 18, unknown 43.1
1916 Female, age 42, unknown 42.3
2583 Male, age 75, right hemisphere 40.7
2409 Female, age 72, unknown 39.4
1941 Male, age 53, unknown 37.1
1889 Female, age 72, unknown 33.7
2590 Female, age 75, unknown 32.6
2665 Male, age 74, both hemispheres 32.6
Superior colliculus
nTPM: 34.5
1913 Female, age 42, unknown 42.5
1995 Male, age 72, unknown 37.9
1839 Male, age 51, unknown 37.7
2587 Male, age 74, left hemisphere 36.0
1895 Male, age 76, right hemisphere 35.8
1796 Male, age 53, unknown 34.8
2668 Female, age 75, unknown 31.3
2664 Male, age 75, both hemispheres 30.1
2087 Female, age 72, unknown 29.4
2261 Male, age 18, unknown 29.3
Ventral tegmental area
nTPM: 38.0
2410 Female, age 72, unknown 41.0
1915 Female, age 42, unknown 40.8
2218 Male, age 76, both hemispheres 40.7
2021 Male, age 53, unknown 36.9
1942 Male, age 51, unknown 35.0
2223 Female, age 72, unknown 33.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 35.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.7
Samples: 183

Max nTPM: 84.6
Min nTPM: 18.9
Std nTPM: 10.3
Median nTPM: 33.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 84.6
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 77.1
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 74.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 72.8
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 61.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 61.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 61.4
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 61.2
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 60.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 57.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 57.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 33.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.2
FF:10158-103A5 76 years, female 33.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 13.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.5
Samples: 4

Max nTPM: 14.7
Min nTPM: 5.4
Sample A Female 14.7
Sample B Female 9.6
Sample C Male 12.3
Sample D Male 5.4
Midbrain
nTPM: 10.2
Samples: 4

Max nTPM: 13.8
Min nTPM: 5.2
Sample A Female 5.2
Sample B Female 9.1
Sample C Male 13.8
Sample D Male 12.6
Periaqueductal gray
nTPM: 7.6
Samples: 3

Max nTPM: 8.5
Min nTPM: 6.6
Sample B Female 6.6
Sample C Male 8.5
Sample D Male 7.7
Superior colliculi
nTPM: 13.5
Samples: 4

Max nTPM: 16.3
Min nTPM: 12.0
Sample A Female 12.1
Sample B Female 13.4
Sample C Male 16.3
Sample D Male 12.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 9.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.4
Samples: 4

Max nTPM: 9.8
Min nTPM: 8.9
Sample A Male 9.5
Sample B Male 9.8
Sample C Female 8.9
Sample D Female 9.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
67870434 Antisense, RP_041018_01_D03, Mouse strain C57BL/6J (56 days, male) 4.9
248565 Antisense, RP_040609_01_A07, Mouse strain C57BL/6J (56 days, male) 1.3

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