HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:18.7 nTPM
HPA Brain:69.0 nTPM
GTEx:18.7 nTPM
FANTOM5:58.4 Scaled Tags Per Million
Pig:17.0 nTPM
Mouse:12.1 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA049939
Glial cells Low
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 69.0
Sample id Sample description nTPM
Hippocampus
nTPM: 57.1
2529 Female, age 94, left hemisphere 73.6
2621 Female, age 67, right hemisphere 64.8
1911 Female, age 85, right hemisphere 57.7
2148 Female, age 91, left hemisphere 55.5
1855 Male, age 76, left hemisphere 46.5
1898 Male, age 80, left hemisphere 44.4
Dentate gyrus
nTPM: 63.7
2531 Female, age 67, both hemispheres 86.6
2530 Female, age 94, left hemisphere 69.9
2246 Female, age 85, both hemispheres 64.3
2528 Male, age 74, both hemispheres 62.8
2010 Male, age 76, both hemispheres 51.4
1927 Female, age 91, both hemispheres 47.4
Entorhinal gyrus
nTPM: 60.5
2764 Male, age 80, right hemisphere 73.6
2117 Female, age 91, right hemisphere 67.8
2613 Female, age 94, left hemisphere 59.2
2686 Male, age 75, right hemisphere 57.0
1787 Male, age 76, left hemisphere 54.0
1938 Female, age 85, left hemisphere 51.3
Hippocampus, CA1
nTPM: 53.9
2082 Female, age 91, right hemisphere 66.5
2527 Male, age 74, both hemispheres 56.2
2045 Male, age 76, both hemispheres 56.0
1873 Female, age 85, both hemispheres 50.8
2749 Male, age 80, left hemisphere 39.9
Hippocampus, CA2
nTPM: 61.6
2437 Female, age 94, left hemisphere 82.7
2113 Female, age 91, right hemisphere 66.9
1940 Female, age 85, left hemisphere 66.0
1963 Male, age 80, left hemisphere 59.3
2249 Male, age 74, both hemispheres 54.1
1892 Male, age 76, both hemispheres 40.3
Hippocampus, CA3
nTPM: 56.3
1891 Female, age 85, both hemispheres 74.8
2620 Female, age 94, left hemisphere 71.2
2861 Female, age 67, both hemispheres 62.9
2436 Male, age 74, both hemispheres 49.6
1867 Male, age 76, both hemispheres 45.8
2137 Male, age 80, left hemisphere 33.7
Parahippocampal cortex
nTPM: 64.4
2532 Female, age 72, left hemisphere 83.9
2693 Female, age 94, both hemispheres 67.1
2245 Female, age 91, both hemispheres 65.9
1990 Female, age 91, right hemisphere 65.4
2622 Female, age 67, right hemisphere 65.1
2692 Male, age 74, both hemispheres 63.8
1850 Male, age 80, both hemispheres 63.7
1933 Female, age 85, both hemispheres 59.6
2018 Male, age 76, both hemispheres 59.4
2250 Female, age 67, right hemisphere 49.8
Perirhinal gyrus
nTPM: 64.5
1794 Male, age 80, right hemisphere 72.9
2848 Male, age 76, right hemisphere 69.0
2521 Female, age 94, right hemisphere 67.7
1841 Female, age 85, right hemisphere 61.3
1847 Female, age 91, left hemisphere 51.4
Subiculum
nTPM: 69.0
2438 Female, age 94, left hemisphere 88.5
2042 Male, age 76, both hemispheres 68.9
1977 Female, age 85, both hemispheres 68.6
2619 Male, age 74, both hemispheres 63.5
1901 Male, age 80, both hemispheres 63.1
2729 Female, age 91, right hemisphere 61.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 18.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 18.7
Samples: 255

Max nTPM: 53.6
Min nTPM: 7.4
Std nTPM: 7.2
Median nTPM: 17.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 53.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 44.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 44.4
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 40.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 38.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 37.4
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 36.7
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 35.7
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 35.1
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 33.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 33.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 58.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 58.4
FF:10153-102I9 76 years, female 73.3
FF:10169-103B7 60 years, female 43.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 17.0
Pig sample Sample description nTPM
Subiculum
nTPM: 15.2
Samples: 4

Max nTPM: 18.4
Min nTPM: 13.6
Sample A Female 18.4
Sample B Female 14.6
Sample C Male 14.1
Sample D Male 13.6
Dorsal hippocampus
nTPM: 15.4
Samples: 4

Max nTPM: 18.2
Min nTPM: 12.9
Sample A Female 18.2
Sample B Female 15.2
Sample C Male 15.2
Sample D Male 12.9
Entorhinal cortex
nTPM: 17.0
Samples: 4

Max nTPM: 18.3
Min nTPM: 16.1
Sample A Female 16.4
Sample B Female 17.2
Sample C Male 18.3
Sample D Male 16.1
Ventral hippocampus
nTPM: 13.3
Samples: 4

Max nTPM: 15.9
Min nTPM: 11.7
Sample A Female 12.6
Sample B Female 11.7
Sample C Male 15.9
Sample D Male 12.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 12.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 12.1
Samples: 4

Max nTPM: 12.9
Min nTPM: 10.5
Sample A Male 12.9
Sample B Male 12.7
Sample C Female 10.5
Sample D Female 12.3
Hippocampal formation
nTPM: 9.3
Samples: 4

Max nTPM: 11.0
Min nTPM: 8.6
Sample A Male 11.0
Sample B Male 8.6
Sample C Female 8.8
Sample D Female 8.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
68157416 Antisense, RP_041116_02_F09, Mouse strain C57BL/6J (56 days, male) 0.1

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