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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1015.7 nTPM
HPA Brain:592.5 nTPM
GTEx:1015.7 nTPM
FANTOM5:1862.1 Scaled Tags Per Million
Pig:1027.2 nTPM
Mouse:1540.2 nTPM
Allen mouse:19.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

592.5
Sample id Sample description nTPM
Amygdala
nTPM: 578.4
2514 Male, age 75, right hemisphere 940.8
1987 Female, age 91, left hemisphere 673.7
2517 Female, age 94, left hemisphere 627.6
2695 Female, age 67, right hemisphere 366.4
2814 Male, age 76, right hemisphere 283.6
Basal amygdala
nTPM: 543.1
2609 Male, age 75, right hemisphere 928.5
2243 Female, age 91, right hemisphere 591.2
2110 Male, age 80, left hemisphere 574.7
2685 Female, age 94, left hemisphere 540.9
1955 Male, age 76, both hemispheres 377.0
2827 Female, age 67, right hemisphere 246.5
Central amygdala
nTPM: 514.9
2701 Female, age 91, right hemisphere 716.0
2515 Male, age 75, right hemisphere 643.5
2239 Male, age 80, left hemisphere 609.8
2826 Female, age 94, left hemisphere 432.0
1905 Male, age 76, both hemispheres 173.0
Corticomedial amygdala
nTPM: 592.5
2242 Female, age 91, right hemisphere 779.6
2428 Male, age 75, right hemisphere 773.8
2429 Female, age 94, left hemisphere 737.5
2829 Male, age 80, left hemisphere 566.5
2240 Male, age 76, both hemispheres 368.2
2535 Female, age 67, right hemisphere 329.4
Lateral amygdala
nTPM: 477.4
2516 Male, age 75, right hemisphere 824.7
2255 Female, age 91, right hemisphere 569.4
2256 Male, age 80, left hemisphere 499.0
2534 Female, age 94, left hemisphere 433.8
1883 Male, age 76, both hemispheres 271.6
2830 Female, age 67, right hemisphere 266.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1015.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1015.7
Samples: 181

Max nTPM: 2706.6
Min nTPM: 217.8
Std nTPM: 475.1
Median nTPM: 929.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 2706.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 2462.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 2191.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2122.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 2091.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 2070.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 2055.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1995.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1990.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1977.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1958.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 1850.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1847.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 1833.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1787.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1757.8
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 1716.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 1663.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1662.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 1624.9
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1591.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1587.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 1572.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1545.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1541.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1531.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1527.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 1509.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1463.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1459.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1437.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1411.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1405.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1397.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1390.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1376.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1375.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1373.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 1367.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 1365.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1362.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1349.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1341.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1332.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1320.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1315.3
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 1313.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1312.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1287.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1264.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1229.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1229.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1223.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1218.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1203.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1192.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1191.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1184.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1176.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1170.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1161.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1156.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1122.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1116.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1114.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1107.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1103.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 1094.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1083.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1083.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1076.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1069.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 1044.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1042.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1042.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1041.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 1030.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1028.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1026.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 1008.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 998.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 997.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 991.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 989.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 973.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 971.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 959.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 951.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 946.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 944.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 929.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 929.4
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 926.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 922.5
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 918.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 918.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 904.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 902.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 899.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 895.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 888.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 888.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 883.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 879.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 854.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 851.1
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 847.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 844.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 841.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 840.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 829.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 828.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 817.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 815.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 810.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 801.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 790.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 783.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 773.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 763.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 763.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 762.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 753.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 752.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 748.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 744.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 739.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 731.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 701.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 677.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 677.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 660.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 657.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 652.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 650.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 646.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 638.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 631.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 621.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 610.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 610.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 607.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 599.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 595.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 588.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 588.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 578.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 566.3
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 565.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 554.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 553.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 548.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 547.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 546.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 525.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 523.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 518.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 502.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 501.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 491.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 481.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 476.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 467.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 464.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 463.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 454.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 452.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 449.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 448.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 441.0
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 388.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 384.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 375.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 354.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 338.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 335.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 291.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 258.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 254.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 230.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 217.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1862.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1862.1
FF:10151-102I7 76 years, female 1862.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1027.2
Pig sample Sample description nTPM
Amygdala
nTPM: 1027.2
Samples: 4

Max nTPM: 1212.8
Min nTPM: 889.2
Sample A Female 1212.8
Sample B Female 1068.7
Sample C Male 889.2
Sample D Male 938.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1540.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 1540.2
Samples: 4

Max nTPM: 1738.7
Min nTPM: 1425.1
Sample A Male 1425.1
Sample B Male 1428.8
Sample C Female 1738.7
Sample D Female 1568.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

19.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 19.1
70429447 Antisense, RP_050614_01_F10, Mouse strain C57BL/6J (56 days, male) 20.2
74750016 Antisense, RP_060220_05_E06, Mouse strain C57BL/6J (56 days, male) 18.1

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