HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:563.6 nTPM
HPA Brain:756.7 nTPM
GTEx:563.6 nTPM
FANTOM5:1976.3 Scaled Tags Per Million
Pig:1146.5 nTPM
Mouse:1751.0 nTPM
Allen mouse:21.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody CAB026225
Glial cells High
Neuronal cells High


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 756.7
Sample id Sample description nTPM
Hippocampus
nTPM: 627.9
2529 Female, age 94, left hemisphere 885.2
2621 Female, age 67, right hemisphere 630.0
2148 Female, age 91, left hemisphere 608.8
1898 Male, age 80, left hemisphere 602.7
1911 Female, age 85, right hemisphere 588.0
1855 Male, age 76, left hemisphere 452.9
Dentate gyrus
nTPM: 417.0
2246 Female, age 85, both hemispheres 526.2
2528 Male, age 74, both hemispheres 510.0
1927 Female, age 91, both hemispheres 460.5
2010 Male, age 76, both hemispheres 371.8
2531 Female, age 67, both hemispheres 336.2
2530 Female, age 94, left hemisphere 297.5
Entorhinal gyrus
nTPM: 569.5
2117 Female, age 91, right hemisphere 786.2
1938 Female, age 85, left hemisphere 662.7
2764 Male, age 80, right hemisphere 592.1
2686 Male, age 75, right hemisphere 530.1
1787 Male, age 76, left hemisphere 463.6
2613 Female, age 94, left hemisphere 382.5
Hippocampus, CA1
nTPM: 523.6
2527 Male, age 74, both hemispheres 720.9
1873 Female, age 85, both hemispheres 523.9
2749 Male, age 80, left hemisphere 522.7
2082 Female, age 91, right hemisphere 487.4
2045 Male, age 76, both hemispheres 363.0
Hippocampus, CA2
nTPM: 508.7
2113 Female, age 91, right hemisphere 647.9
2249 Male, age 74, both hemispheres 553.1
2437 Female, age 94, left hemisphere 494.1
1892 Male, age 76, both hemispheres 491.8
1940 Female, age 85, left hemisphere 471.3
1963 Male, age 80, left hemisphere 394.0
Hippocampus, CA3
nTPM: 512.9
2436 Male, age 74, both hemispheres 633.7
1891 Female, age 85, both hemispheres 615.2
1867 Male, age 76, both hemispheres 506.4
2861 Female, age 67, both hemispheres 454.9
2620 Female, age 94, left hemisphere 434.1
2137 Male, age 80, left hemisphere 433.1
Parahippocampal cortex
nTPM: 698.5
2622 Female, age 67, right hemisphere 847.1
1850 Male, age 80, both hemispheres 805.2
2532 Female, age 72, left hemisphere 756.4
2245 Female, age 91, both hemispheres 726.9
2250 Female, age 67, right hemisphere 723.4
1933 Female, age 85, both hemispheres 663.0
2692 Male, age 74, both hemispheres 659.8
2693 Female, age 94, both hemispheres 657.7
1990 Female, age 91, right hemisphere 643.5
2018 Male, age 76, both hemispheres 502.5
Perirhinal gyrus
nTPM: 756.7
1794 Male, age 80, right hemisphere 904.5
1841 Female, age 85, right hemisphere 878.7
2521 Female, age 94, right hemisphere 817.2
1847 Female, age 91, left hemisphere 655.5
2848 Male, age 76, right hemisphere 527.6
Subiculum
nTPM: 629.4
2438 Female, age 94, left hemisphere 836.0
2619 Male, age 74, both hemispheres 751.6
2729 Female, age 91, right hemisphere 626.9
1901 Male, age 80, both hemispheres 594.0
1977 Female, age 85, both hemispheres 555.6
2042 Male, age 76, both hemispheres 412.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 563.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 563.6
Samples: 255

Max nTPM: 1913.3
Min nTPM: 128.1
Std nTPM: 311.8
Median nTPM: 513.7
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 1913.3
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 1773.9
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 1665.8
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 1552.1
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 1485.0
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 1463.7
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 1419.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 1316.5
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 1266.3
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 1262.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 1254.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1976.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1976.3
FF:10153-102I9 76 years, female 2285.7
FF:10169-103B7 60 years, female 1666.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 1146.5
Pig sample Sample description nTPM
Subiculum
nTPM: 1146.5
Samples: 4

Max nTPM: 1678.6
Min nTPM: 932.8
Sample A Female 1678.6
Sample B Female 1030.0
Sample C Male 932.8
Sample D Male 944.7
Dorsal hippocampus
nTPM: 850.6
Samples: 4

Max nTPM: 1022.9
Min nTPM: 729.2
Sample A Female 1022.9
Sample B Female 729.2
Sample C Male 892.8
Sample D Male 757.5
Entorhinal cortex
nTPM: 1005.6
Samples: 4

Max nTPM: 1146.5
Min nTPM: 834.8
Sample A Female 1146.5
Sample B Female 1057.8
Sample C Male 983.2
Sample D Male 834.8
Ventral hippocampus
nTPM: 899.6
Samples: 4

Max nTPM: 1120.7
Min nTPM: 694.6
Sample A Female 1120.7
Sample B Female 928.1
Sample C Male 854.9
Sample D Male 694.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 1751.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 1751.1
Samples: 4

Max nTPM: 1875.0
Min nTPM: 1622.4
Sample A Male 1875.0
Sample B Male 1622.4
Sample C Female 1814.0
Sample D Female 1692.8
Hippocampal formation
nTPM: 1343.9
Samples: 4

Max nTPM: 1544.8
Min nTPM: 1124.8
Sample A Male 1544.8
Sample B Male 1271.8
Sample C Female 1124.8
Sample D Female 1434.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 21.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 21.1
70429447 Antisense, RP_050614_01_F10, Mouse strain C57BL/6J (56 days, male) 22.7
74750016 Antisense, RP_060220_05_E06, Mouse strain C57BL/6J (56 days, male) 19.5

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