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  • TISSUE

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  • SPARCL1
BRAIN HYPOTHALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hypothalamus
Brain methods
HYPOTHALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:347.3 nTPM
HPA Brain:739.7 nTPM
GTEx:347.3 nTPM
Pig:1149.8 nTPM
Mouse:2086.0 nTPM
Allen mouse:19.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HYPOTHALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

739.7
Sample id Sample description nTPM
Arcuate nucleus
nTPM: 692.3
1961 Female, age 42, unknown 744.9
2226 Male, age 75, left hemisphere 639.6
Dorsomedial nucleus
nTPM: 406.4
2017 Female, age 42, unknown 546.9
2041 Female, age 72, unknown 527.8
1989 Male, age 62, unknown 144.5
Lateral hypothalamic area
nTPM: 431.5
1791 Male, age 80, right hemisphere 605.1
2271 Male, age 75, both hemispheres 430.2
2228 Male, age 66, unknown 361.8
2412 Male, age 62, unknown 329.0
Mammillary body
nTPM: 559.7
1834 Female, age 42, unknown 722.0
2413 Male, age 66, unknown 596.2
1948 Female, age 72, unknown 559.2
1923 Female, age 72, unknown 492.5
1945 Male, age 80, right hemisphere 428.6
Paraventricular nucleus
nTPM: 396.8
2700 Male, age 62, unknown 396.8
Preoptic area
nTPM: 614.5
1861 Female, age 42, unknown 850.6
1907 Male, age 80, right hemisphere 616.0
2414 Female, age 72, unknown 376.9
Supraoptic nucleus
nTPM: 739.7
1894 Female, age 72, unknown 842.1
2835 Female, age 72, unknown 694.8
2043 Male, age 62, unknown 682.2
Ventromedial nucleus
nTPM: 662.2
1822 Female, age 42, unknown 741.9
1982 Female, age 72, unknown 582.5

HYPOTHALAMUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

347.3
GTEx sample id Sample description nTPM
Brain - Hypothalamus
Average nTPM: 347.3
Samples: 257

Max nTPM: 1463.8
Min nTPM: 70.6
Std nTPM: 198.6
Median nTPM: 300.0
GTEX-QDT8-0011-R8A-SM-G8W63 30-39 years, female 1463.8
GTEX-1445S-0011-R8a-SM-5PNWX 60-69 years, male 1431.6
GTEX-1JMPZ-0011-R8b-SM-F341A 30-39 years, male 1069.2
GTEX-13OVJ-0011-R8b-SM-5L3FS 50-59 years, female 1038.8
GTEX-1GN1U-0011-R8a-SM-CL537 50-59 years, female 965.6
GTEX-NPJ8-0011-R8a-SM-2HMLG 40-49 years, male 944.4
GTEX-11TTK-0011-R8b-SM-DO111 60-69 years, female 829.6
GTEX-T5JC-0011-R8A-SM-32PLM 20-29 years, male 829.1
GTEX-1RLM8-0011-R8a-SM-EYYXR 50-59 years, male 795.6
GTEX-13NYS-0011-R8a-SM-5MR5H 60-69 years, male 775.2
GTEX-13SLW-0011-R8b-SM-5SI64 70-79 years, male 759.7
GTEX-11DZ1-0011-R8b-SM-DNZZI 50-59 years, male 699.5
GTEX-X261-0011-R8A-SM-4E3I5 50-59 years, male 696.7
GTEX-QMR6-0011-R8A-SM-32PKJ 50-59 years, male 683.5
GTEX-147F4-0011-R8b-SM-5S2UN 50-59 years, male 674.5
GTEX-14C5O-0011-R8a-SM-5YYAG 60-69 years, male 663.9
GTEX-13CIG-0011-R8b-SM-5LZX5 50-59 years, male 645.1
GTEX-P44H-0011-R8A-SM-2XCEL 40-49 years, male 631.5
GTEX-1F88E-0011-R8a-SM-CJI2H 60-69 years, female 624.8
GTEX-1B8SG-0011-R8b-SM-7IGNW 50-59 years, male 616.3
GTEX-1MCQQ-0011-R8b-SM-F341H 60-69 years, male 612.8
GTEX-1IKK5-0011-R8b-SM-CJI45 60-69 years, male 611.7
GTEX-13VXU-0011-R8b-SM-GJ3RR 50-59 years, male 591.1
GTEX-15RJE-0011-R8a-SM-H7OGM 40-49 years, male 588.1
GTEX-14753-0011-R8b-SM-5S2U1 60-69 years, male 582.4
GTEX-1O9I2-0011-R8a-SM-F2TAX 50-59 years, male 578.0
GTEX-16XZZ-0011-R8b-SM-7LT8S 60-69 years, male 563.3
GTEX-XMD1-0011-R8A-SM-4AT48 60-69 years, male 562.0
GTEX-1GTWX-0011-R8a-SM-CE6RM 60-69 years, male 561.4
GTEX-ZDXO-0011-R8a-SM-4WWD7 60-69 years, male 558.6
GTEX-13OW6-0011-R8a-SM-5L3GF 50-59 years, male 553.7
GTEX-1LVAO-0011-R8a-SM-F3K5J 60-69 years, male 553.4
GTEX-1GMR8-0011-R8a-SM-CKZNX 50-59 years, female 548.9
GTEX-1PWST-0011-R8a-SM-F3K5P 70-79 years, male 539.5
GTEX-1I1GS-0011-R8b-SM-CKZPE 60-69 years, male 533.4
GTEX-144GL-0011-R8a-SM-5Q5B1 50-59 years, male 522.8
GTEX-11EMC-0011-R8b-SM-DO91Z 60-69 years, female 520.5
GTEX-1LKK1-0011-R8a-SM-F341O 50-59 years, female 510.5
GTEX-13CF2-0011-R8b-SM-5IJCX 60-69 years, male 500.7
GTEX-11ONC-0011-R8b-SM-5NQ87 60-69 years, male 500.2
GTEX-1CAMQ-0011-R8a-SM-ARU85 40-49 years, male 499.0
GTEX-13SLX-0011-R8b-SM-5PNWZ 50-59 years, female 496.7
GTEX-1RQEC-0011-R8b-SM-F648X 60-69 years, male 496.0
GTEX-13X6K-0011-R8b-SM-5PNZ4 60-69 years, female 493.5
GTEX-1H1CY-0011-R8b-SM-CJI31 60-69 years, female 489.9
GTEX-12126-0011-R8a-SM-GI4WV 20-29 years, male 488.1
GTEX-1LSVX-0011-R8a-SM-F2TB3 60-69 years, male 487.1
GTEX-13PLJ-0011-R8a-SM-GJ3QG 60-69 years, female 486.7
GTEX-1JMLX-0011-R8a-SM-G9EPQ 50-59 years, male 478.9
GTEX-139TS-0011-R8a-SM-5J1NP 60-69 years, male 475.6
GTEX-13QJC-0011-R8b-SM-5S2U6 60-69 years, female 469.5
GTEX-17HII-0011-R8a-SM-79OK6 50-59 years, male 466.4
GTEX-1C6VR-0011-R8b-SM-7MXUF 60-69 years, male 460.4
GTEX-WL46-0011-R8B-SM-H7OHG 50-59 years, male 451.3
GTEX-1NV5F-0011-R8b-SM-F647Z 60-69 years, female 447.9
GTEX-1R46S-0011-R8a-SM-F3K4Q 60-69 years, female 441.5
GTEX-ZAB4-0011-R8b-SM-4SOKF 40-49 years, male 436.2
GTEX-WWYW-0011-R8A-SM-3NB3S 50-59 years, female 433.4
GTEX-1N5O9-0011-R8a-SM-F649C 60-69 years, male 433.1
GTEX-1CAV2-0011-R8a-SM-GRR24 40-49 years, female 428.3
GTEX-1477Z-0011-R8b-SM-5S2RG 60-69 years, male 421.8
GTEX-11WQK-0011-R8a-SM-5BC7C 50-59 years, male 421.3
GTEX-14JIY-0011-R8a-SM-6AJAP 60-69 years, male 420.0
GTEX-1JMQK-0011-R8a-SM-G8LMS 60-69 years, male 419.5
GTEX-1192X-0011-R8b-SM-DO11U 50-59 years, male 417.7
GTEX-15DCD-0011-R8b-SM-7KUEF 70-79 years, female 416.6
GTEX-1H1ZS-0011-R8b-SM-A9SKA 70-79 years, male 416.1
GTEX-1CB4H-0011-R8b-SM-CJI26 60-69 years, female 413.0
GTEX-13JVG-0011-R8a-SM-5KM3E 60-69 years, male 411.5
GTEX-1H23P-0011-R8b-SM-A9G1G 60-69 years, male 407.3
GTEX-1JN1M-0011-R8b-SM-F6485 60-69 years, female 407.2
GTEX-ZYY3-0011-R8a-SM-H7OHF 60-69 years, female 403.4
GTEX-1N2EF-0011-R8a-SM-F6481 60-69 years, male 399.8
GTEX-1GZ2Q-0011-R8a-SM-CE6RO 40-49 years, male 399.6
GTEX-13O3Q-0011-R8b-SM-5KM2J 50-59 years, male 398.7
GTEX-1IDJH-0011-R8b-SM-ARZLL 70-79 years, male 393.3
GTEX-1R9PO-0011-R8a-SM-F2TA3 60-69 years, female 392.1
GTEX-PWO3-0011-R8A-SM-2I5GD 60-69 years, female 391.5
GTEX-1LG7Y-0011-R8b-SM-F3K5C 50-59 years, male 390.9
GTEX-1RDX4-0011-R8a-SM-G8LLT 50-59 years, female 389.5
GTEX-1PPGY-0011-R8a-SM-F649R 60-69 years, male 388.8
GTEX-1POEN-0011-R8b-SM-F647O 30-39 years, female 387.4
GTEX-X4XY-0011-R8A-SM-46MVC 60-69 years, male 386.2
GTEX-1LSNL-0011-R8b-SM-F2TAH 50-59 years, male 384.6
GTEX-1B996-0011-R8b-SM-79OOS 60-69 years, male 383.2
GTEX-13PDP-0011-R8b-SM-5O9CS 60-69 years, male 383.0
GTEX-1HSKV-0011-R8a-SM-CL54X 60-69 years, male 382.0
GTEX-13OVL-0011-R8a-SM-5L3HH 50-59 years, male 381.4
GTEX-1C64N-0011-R8b-SM-7MGXE 50-59 years, male 367.3
GTEX-12WSM-0011-R8a-SM-5DUWJ 60-69 years, male 365.6
GTEX-1N2DW-0011-R8a-SM-EY5YD 50-59 years, male 363.5
GTEX-1IKOH-0011-R8a-SM-A9SKG 60-69 years, female 361.1
GTEX-14PQA-0011-R8b-SM-6AJAB 50-59 years, female 360.5
GTEX-13RTJ-0011-R8b-SM-5O9DL 60-69 years, male 357.4
GTEX-1QP6S-0011-R8a-SM-F649M 40-49 years, male 356.1
GTEX-14PJO-0011-R8a-SM-6AJAL 60-69 years, male 354.9
GTEX-1I1GQ-0011-R8a-SM-C1YRS 50-59 years, male 354.6
GTEX-13FXS-0011-R8a-SM-5J1MN 50-59 years, male 354.5
GTEX-11H98-0011-R8a-SM-5NQ8V 50-59 years, male 353.1
GTEX-111FC-0011-R8b-SM-GI4VS 60-69 years, male 353.0
GTEX-1GZHY-0011-R8b-SM-9OSWK 50-59 years, female 342.6
GTEX-15SHU-0011-R8a-SM-H6Q7V 40-49 years, female 342.2
GTEX-1CB4G-0011-R8b-SM-9WG7H 60-69 years, male 341.9
GTEX-1HBPI-0011-R8a-SM-A9G1S 50-59 years, male 341.3
GTEX-1JJEA-0011-R8a-SM-F3419 60-69 years, male 340.7
GTEX-11ZU8-0011-R8b-SM-GHWOM 60-69 years, male 338.8
GTEX-1GZ4I-0011-R8b-SM-9WG76 50-59 years, male 338.3
GTEX-Y8DK-0011-R8B-SM-EYYVQ 60-69 years, male 338.1
GTEX-11GSP-0011-R8b-SM-5NQ79 60-69 years, female 336.6
GTEX-ZAK1-0011-R8a-SM-H7OGE 50-59 years, female 335.7
GTEX-1A3MX-0011-R8a-SM-7P8PI 60-69 years, male 334.6
GTEX-1JMOU-0011-R8b-SM-F2TA9 60-69 years, female 333.4
GTEX-1HCU6-0011-R8a-SM-CJI3R 60-69 years, female 329.0
GTEX-15DYW-0011-R8b-SM-GRR3B 60-69 years, female 328.8
GTEX-OXRN-0011-R8A-SM-E9TI1 50-59 years, male 328.8
GTEX-1E2YA-0011-R8a-SM-CKZNG 50-59 years, male 328.4
GTEX-1H1DG-0011-R8a-SM-CL54Z 70-79 years, male 326.6
GTEX-1LVA9-0011-R8a-SM-F3K5G 50-59 years, male 325.1
GTEX-14LZ3-0011-R8b-SM-COH3M 60-69 years, female 324.6
GTEX-12WSA-0011-R8a-SM-5P9EX 60-69 years, male 322.4
GTEX-QVUS-0011-R8A-SM-3GAD7 60-69 years, female 317.1
GTEX-WVLH-0011-R8A-SM-3MJFC 50-59 years, male 316.0
GTEX-1RAZS-0011-R8a-SM-F2TBI 50-59 years, male 313.3
GTEX-1A8G6-0011-R8a-SM-7P8PD 60-69 years, male 312.7
GTEX-11GS4-0011-R8b-SM-GI4XA 60-69 years, male 308.3
GTEX-17EVP-0011-R8b-SM-7DUF9 40-49 years, male 304.2
GTEX-1AX9I-0011-R8a-SM-7P8PJ 60-69 years, male 303.3
GTEX-11WQC-0011-R8b-SM-57WCH 60-69 years, male 300.5
GTEX-132Q8-0011-R8b-SM-5DUWX 60-69 years, male 300.0
GTEX-14BIL-0011-R8b-SM-69LQK 50-59 years, male 298.7
GTEX-15EO6-0011-R8a-SM-H6Q6R 50-59 years, male 297.6
GTEX-13O3O-0011-R8b-SM-5LUAL 60-69 years, female 295.8
GTEX-1F48J-0011-R8a-SM-9OSWW 50-59 years, female 295.1
GTEX-1R9K4-0011-R8b-SM-F649L 60-69 years, male 294.7
GTEX-1N2EE-0011-R8a-SM-F3K4X 60-69 years, male 294.2
GTEX-11O72-0011-R8a-SM-GJ3R9 40-49 years, male 293.5
GTEX-NL4W-0011-R8a-SM-2I3G4 50-59 years, male 292.8
GTEX-RNOR-0011-R8A-SM-EZ6MN 50-59 years, female 292.1
GTEX-17F97-0011-R8a-SM-7DUET 50-59 years, male 287.9
GTEX-1KD4Q-0011-R8a-SM-F341N 40-49 years, male 287.6
GTEX-13OW8-0011-R8a-SM-5L3G5 60-69 years, male 285.7
GTEX-1BAJH-0011-R8a-SM-7MXUB 70-79 years, male 284.7
GTEX-11OF3-0011-R8b-SM-57WCS 60-69 years, male 284.0
GTEX-1HGF4-0011-R8b-SM-CKZP9 60-69 years, male 282.7
GTEX-1IY9M-0011-R8a-SM-EYYWW 60-69 years, male 280.6
GTEX-14DAQ-0011-R8a-SM-G9ERP 60-69 years, female 279.9
GTEX-1A8G7-0011-R8a-SM-7P8S6 60-69 years, male 278.4
GTEX-1JN6P-0011-R8a-SM-F6499 60-69 years, male 278.1
GTEX-1399T-0011-R8b-SM-5IJD8 60-69 years, male 277.6
GTEX-13X6J-0011-R8b-SM-5PNUA 50-59 years, male 276.4
GTEX-13NYB-0011-R8a-SM-5KM4R 40-49 years, male 269.0
GTEX-1H3NZ-0011-R8a-SM-CKZP6 60-69 years, male 268.9
GTEX-ZF28-0011-R8a-SM-4WWFW 60-69 years, male 268.8
GTEX-15G19-0011-R8b-SM-7KUL1 60-69 years, male 268.7
GTEX-14BMV-0011-R8a-SM-G9ERM 50-59 years, male 267.9
GTEX-1J8Q2-0011-R8b-SM-D4P2E 60-69 years, male 266.0
GTEX-1RQED-0011-R8a-SM-G8LKO 60-69 years, male 265.8
GTEX-1NV8Z-0011-R8b-SM-F3K3J 60-69 years, male 262.9
GTEX-ZXG5-0011-R8a-SM-57WD1 60-69 years, male 260.1
GTEX-YFC4-0011-R8a-SM-4SOK3 40-49 years, female 258.8
GTEX-1KWVE-0011-R8a-SM-F3K4V 30-39 years, male 258.2
GTEX-131XW-0011-R8a-SM-5DUWY 50-59 years, female 256.5
GTEX-16GPK-0011-R8a-SM-79OMQ 60-69 years, male 256.5
GTEX-N7MS-0011-R8a-SM-2YUMK 60-69 years, male 255.5
GTEX-1GF9V-0011-R8b-SM-CE6RB 60-69 years, male 255.1
GTEX-13G51-0011-R8b-SM-5LZZ4 60-69 years, male 253.8
GTEX-13PVQ-0011-R8a-SM-GJ3PT 50-59 years, male 253.3
GTEX-13FLV-0011-R8a-SM-5LZZE 50-59 years, male 251.4
GTEX-1F6I4-0011-R8a-SM-9QEIA 60-69 years, male 248.9
GTEX-ZAJG-0011-R8a-SM-H6Q6K 50-59 years, female 246.1
GTEX-YJ89-0011-R8b-SM-4SOK8 60-69 years, male 242.9
GTEX-13OVH-0011-R8b-SM-5MR35 70-79 years, male 242.0
GTEX-13QIC-0011-R8b-SM-5O9CV 60-69 years, female 240.5
GTEX-12ZZX-0011-R8a-SM-5DUW8 40-49 years, female 238.3
GTEX-13NZA-0011-R8b-SM-5KM2Q 60-69 years, male 237.5
GTEX-1LH75-0011-R8b-SM-F2TB2 50-59 years, female 236.4
GTEX-1MA7X-0011-R8a-SM-G9EQD 60-69 years, male 236.0
GTEX-1MJK2-0011-R8a-SM-F341I 50-59 years, male 235.7
GTEX-117YW-0011-R8a-SM-GINAB 50-59 years, male 234.5
GTEX-1KANB-0011-R8a-SM-F3K5N 50-59 years, male 232.4
GTEX-1H3O1-0011-R8a-SM-CL555 60-69 years, male 232.1
GTEX-1HBPH-0011-R8b-SM-CL556 40-49 years, female 232.0
GTEX-14ASI-0011-R8b-SM-5S2UB 60-69 years, male 230.6
GTEX-13112-0011-R8b-SM-664OV 50-59 years, male 228.9
GTEX-1QEPI-0011-R8a-SM-G8LLI 60-69 years, female 222.6
GTEX-1F75A-0011-R8a-SM-CL539 50-59 years, male 219.2
GTEX-11GSO-0011-R8b-SM-GJ3PM 60-69 years, male 218.1
GTEX-1I1CD-0011-R8b-SM-CJI3X 60-69 years, female 218.0
GTEX-1B8L1-0011-R8b-SM-7P8ST 60-69 years, male 217.8
GTEX-13X6I-0011-R8a-SM-5PNZF 60-69 years, male 216.4
GTEX-16Z82-0011-R8a-SM-7DUEX 60-69 years, male 215.2
GTEX-1F52S-0011-R8a-SM-9OSXA 60-69 years, female 213.9
GTEX-1HCVE-0011-R8a-SM-ARU7A 50-59 years, male 213.4
GTEX-18465-0011-R8b-SM-7LG6O 50-59 years, male 212.0
GTEX-13FLW-0011-R8b-SM-5J1MZ 50-59 years, male 210.2
GTEX-17EVQ-0011-R8a-SM-7189T 70-79 years, male 210.1
GTEX-13OW5-0011-R8a-SM-5L3GQ 60-69 years, male 208.2
GTEX-16NPV-0011-R8a-SM-7EPH8 50-59 years, female 207.3
GTEX-1B933-0011-R8a-SM-9QEGX 50-59 years, female 206.2
GTEX-1HB9E-0011-R8b-SM-A9G1O 50-59 years, male 203.4
GTEX-145LU-0011-R8b-SM-5PNZG 50-59 years, male 201.3
GTEX-11ZTS-0011-R8a-SM-57WDI 60-69 years, female 201.2
GTEX-1HFI6-0011-R8a-SM-ARZLP 40-49 years, male 200.4
GTEX-1F75W-0011-R8a-SM-9QEI4 60-69 years, male 199.7
GTEX-1I1HK-0011-R8b-SM-E8VN9 60-69 years, male 199.6
GTEX-1EMGI-0011-R8b-SM-9QEID 60-69 years, male 198.9
GTEX-QVJO-0011-R8A-SM-447C7 60-69 years, female 198.6
GTEX-1J1OQ-0011-R8a-SM-ACKVE 40-49 years, female 198.5
GTEX-1P4AB-0011-R8a-SM-F341R 50-59 years, male 194.6
GTEX-1C6WA-0011-R8b-SM-7P8S7 60-69 years, male 194.3
GTEX-ZZPT-0011-R8a-SM-GQ1CW 50-59 years, male 190.2
GTEX-13N1W-0011-R8a-SM-5MR56 70-79 years, male 189.9
GTEX-15ER7-0011-R8a-SM-7KUL2 20-29 years, female 188.9
GTEX-1GN1V-0011-R8a-SM-CKZNV 60-69 years, male 187.1
GTEX-14PN4-0011-R8a-SM-6EU1H 50-59 years, male 186.8
GTEX-ZVZQ-0011-R8a-SM-51MR5 60-69 years, female 186.6
GTEX-1GN2E-0011-R8a-SM-CE6RK 60-69 years, male 183.5
GTEX-1CB4J-0011-R8a-SM-9QEHU 60-69 years, male 180.8
GTEX-14PJM-0011-R8b-SM-69LPD 50-59 years, female 179.4
GTEX-T6MN-0011-R8A-SM-32QP3 50-59 years, male 178.7
GTEX-15CHQ-0011-R8b-SM-CNPO4 60-69 years, male 178.6
GTEX-13OW7-0011-R8b-SM-5L3HR 50-59 years, male 177.0
GTEX-X4XX-0011-R8B-SM-46MWM 60-69 years, male 172.9
GTEX-1313W-0011-R8a-SM-5DUVM 50-59 years, female 172.2
GTEX-1JMQJ-0011-R8a-SM-G8LKT 50-59 years, male 170.4
GTEX-1B8SF-0011-R8b-SM-7P8SX 60-69 years, male 167.1
GTEX-RVPV-0011-R8A-SM-F21II 60-69 years, male 166.2
GTEX-S7SE-0011-R8A-SM-F649T 50-59 years, male 165.3
GTEX-17HG3-0011-R8a-SM-79OK7 30-39 years, female 163.6
GTEX-WZTO-0011-R8A-SM-4E3II 40-49 years, male 163.2
GTEX-1ICLZ-0011-R8b-SM-ACKX4 60-69 years, male 162.8
GTEX-ZUA1-0011-R8b-SM-51MST 40-49 years, male 161.4
GTEX-WHSE-0011-R8A-SM-3P5Z1 20-29 years, male 161.0
GTEX-12696-0011-R8a-SM-GINAP 60-69 years, male 158.6
GTEX-1E1VI-0011-R8b-SM-ARU8E 50-59 years, male 158.3
GTEX-16YQH-0011-R8a-SM-7DUFB 30-39 years, male 156.9
GTEX-1F6IF-0011-R8a-SM-9OSX5 60-69 years, male 156.1
GTEX-145MH-0011-R8a-SM-5PNUL 50-59 years, male 155.1
GTEX-1OJC4-0011-R8a-SM-F3K5B 50-59 years, female 151.0
GTEX-14E7W-0011-R8b-SM-GQ1D6 70-79 years, male 148.7
GTEX-11DYG-0011-R8a-SM-DO93F 60-69 years, male 141.1
GTEX-1GF9W-0011-R8b-SM-9QEIR 60-69 years, male 140.1
GTEX-11DXW-0011-R8a-SM-GIN8T 40-49 years, male 139.9
GTEX-1GN73-0011-R8b-SM-CKZNY 60-69 years, male 137.1
GTEX-ZVT3-0011-R8b-SM-57WDJ 60-69 years, female 134.2
GTEX-11NV4-0011-R8b-SM-GHWO4 60-69 years, male 132.7
GTEX-131XH-0011-R8a-SM-5EGLL 50-59 years, male 131.9
GTEX-11DXY-0011-R8a-SM-DO11M 60-69 years, male 121.6
GTEX-12WSD-0011-R8b-SM-9QEGI 60-69 years, female 110.7
GTEX-117XS-0011-R8b-SM-GHWOD 60-69 years, male 110.3
GTEX-1HT8W-0011-R8b-SM-CM2SX 30-39 years, male 106.4
GTEX-11EI6-0011-R8a-SM-DO93M 60-69 years, male 105.9
GTEX-X585-0011-R8A-SM-46MUX 50-59 years, male 101.1
GTEX-Z93S-0011-R8a-SM-4RGNL 50-59 years, male 98.3
GTEX-145LS-0011-R8b-SM-5PNXA 60-69 years, female 82.0
GTEX-1QMI2-0011-R8a-SM-F3429 60-69 years, male 79.6
GTEX-11ZUS-0011-R8a-SM-5BC73 30-39 years, male 70.6
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HYPOTHALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1149.8
Pig sample Sample description nTPM
Hypothalamus
nTPM: 1149.8
Samples: 4

Max nTPM: 1326.8
Min nTPM: 919.1
Sample A Female 1326.8
Sample B Female 1278.3
Sample C Male 1075.0
Sample D Male 919.1

HYPOTHALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2086.0
Mouse sample Sample description nTPM
Hypothalamus
nTPM: 2086.0
Samples: 4

Max nTPM: 2218.7
Min nTPM: 1954.2
Sample A Male 1954.2
Sample B Male 2218.7
Sample C Female 2061.6
Sample D Female 2109.5

HYPOTHALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

19.8
Allen experiment id Experiment description Expression energy
Hypothalamus
Expression energy: 19.8
74750016 Antisense, RP_060220_05_E06, Mouse strain C57BL/6J (56 days, male) 19.9
70429447 Antisense, RP_050614_01_F10, Mouse strain C57BL/6J (56 days, male) 19.7

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