SPARCL1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • IMMUNE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
  • METABOLIC
  • ISOFORM
  • EVOLUTIONARY
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • AI IMPLEMENTATIONS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Region
Niche
Category
Brain region
Category
Tau score
Brain domain
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Regulation
Cancer
Regulation
Cancer
Category
Cancer
Category
Tau score
Correlation
Correlation
Cancer
Category
Tau score
Cluster
Variants
Source
PTM
ipTM
Interacting gene (ensg_id)
Type
Number of interactions
Type
Heterodimer
Subsystem
Isoforms
Specificity
Expression
Species
Ortholog
Type
Species
Tissue
Category
Species
Tau score
Data
Category
Data
Species
Category
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • METABOLIC

  • ISOFORM

  • EVOLUTION

  • SPARCL1
EVOLUTIONARY SPINAL CORD Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:264.7 nTPM
HPA Brain:846.3 nTPM
GTEx:264.7 nTPM
FANTOM5:1981.8 Scaled Tags Per Million
Macaque:883.0 nTPM
Mouse:1355.8 nTPM
Rat:1059.8 nTPM
Pig:1384.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - PROTEINTALKS DB MS
Median intensity 3557
Sample Intensity
Spinal cord_01
5790
Spinal cord_02
4664
Spinal cord_03
2648
Spinal cord_04
4099
Spinal cord_05
3025
Spinal cord_06
3200
Spinal cord_07
2691
Spinal cord_08
3914

SPINAL CORD - HPA Brain Stereo-seq

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

846.3
Sample id Sample description nTPM
Anterior funiculus (white matter)
nTPM: 585.3
2819 Male, age 47, both hemispheres 669.6
2818 Female, age 79, both hemispheres 649.3
2193 Male, age 75, both hemispheres 625.6
2734 Male, age 80, both hemispheres 396.7
Cervical spinal cord, central gray
nTPM: 696.4
1981 Female, age 72, midline 934.6
2048 Male, age 55, midline 917.0
2816 Male, age 47, midline 571.6
2194 Female, age 79, both hemispheres 562.7
2565 Male, age 75, midline 496.3
Cervical spinal cord, dorsal horn
nTPM: 846.3
2721 Male, age 90, both hemispheres 1479.3
2173 Female, age 72, unknown 809.9
2297 Male, age 75, both hemispheres 774.9
2069 Male, age 47, both hemispheres 741.0
1877 Male, age 55, unknown 681.4
2296 Male, age 66, both hemispheres 591.4
Cervical spinal cord, ventral horn
nTPM: 595.0
2098 Female, age 72, unknown 997.6
2295 Male, age 66, both hemispheres 646.1
2809 Male, age 90, both hemispheres 639.6
2068 Male, age 55, unknown 472.2
2480 Male, age 75, both hemispheres 423.3
2820 Female, age 79, both hemispheres 391.1
Dorsal funiculus (white matter)
nTPM: 567.2
2812 Male, age 66, both hemispheres 736.6
2064 Female, age 79, both hemispheres 676.5
2817 Male, age 47, both hemispheres 597.7
2128 Male, age 75, both hemispheres 505.8
2810 Male, age 90, both hemispheres 319.4
Lateral funiculus (white matter)
nTPM: 443.5
2094 Female, age 79, both hemispheres 723.4
2294 Male, age 66, both hemispheres 370.2
2099 Male, age 90, both hemispheres 344.4
2192 Male, age 75, both hemispheres 335.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

264.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 264.7
Samples: 204

Max nTPM: 1022.0
Min nTPM: 76.8
Std nTPM: 147.5
Median nTPM: 227.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1022.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 745.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 740.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 737.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 711.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 704.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 657.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 651.9
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 607.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 600.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 580.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 566.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 561.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 547.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 499.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 461.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 454.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 452.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 446.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 442.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 441.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 441.5
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 433.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 426.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 417.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 408.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 399.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 398.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 396.4
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 387.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 384.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 376.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 373.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 373.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 369.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 369.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 367.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 365.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 362.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 362.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 359.7
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 358.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 349.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 348.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 347.6
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 346.4
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 340.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 334.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 332.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 329.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 328.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 325.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 320.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 319.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 316.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 316.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 312.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 303.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 302.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 298.0
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 297.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 296.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 296.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 295.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 295.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 295.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 286.1
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 280.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 280.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 277.6
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 276.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 275.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 272.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 271.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 271.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 265.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 264.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 261.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 260.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 256.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 256.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 255.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 255.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 250.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 250.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 249.2
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 248.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 247.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 245.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 245.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 245.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 245.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 244.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 241.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 240.1
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 236.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 233.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 230.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 229.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 228.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 228.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 227.4
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 226.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 218.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 213.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 212.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 212.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 211.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 210.9
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 208.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 207.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 206.0
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 204.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 201.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 201.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 201.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 201.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 199.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 198.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 198.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 195.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 195.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 194.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 194.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 194.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 193.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 193.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 192.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 191.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 189.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 188.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 188.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 187.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 187.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 184.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 184.3
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 183.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 182.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 181.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 180.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 178.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 177.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 176.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 174.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 174.4
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 172.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 171.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 170.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 169.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 169.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 168.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 167.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 166.7
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 164.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 163.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 158.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 157.2
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 154.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 154.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 153.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 152.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 150.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 149.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 149.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 148.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 146.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 146.4
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 146.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 146.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 144.9
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 144.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 144.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 140.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 140.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 139.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 138.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 136.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 136.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 135.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 134.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 128.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 128.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 126.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 126.5
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 125.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 124.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 123.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 123.7
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 123.1
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 122.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 122.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 122.2
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 122.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 117.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 115.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 113.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 109.4
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 102.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 100.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 97.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 94.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 91.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 82.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 76.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1981.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1981.8
FF:10159-103A6 76 years, female 2001.5
FF:10181-103D1 60 years, female 1962.2

SPINAL CORD - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

883.0
Macaque sample Sample description nTPM
Dorsal spinal cord
nTPM: 683.0
Samples: 2

Max nTPM: 737.9
Min nTPM: 628.1
Sample A 628.1
Sample B 737.9
Ventral spinal cord
nTPM: 883.0
Samples: 1

Max nTPM: 883.0
Min nTPM: 883.0
Sample A 883.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1384.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 1019.1
Samples: 4

Max nTPM: 1271.0
Min nTPM: 706.5
Sample A Female 1110.1
Sample B Female 1271.0
Sample C Male 706.5
Sample D Male 988.9
Ventral spinal cord
nTPM: 1384.8
Samples: 4

Max nTPM: 1528.5
Min nTPM: 1086.5
Sample A Female 1528.5
Sample B Female 1507.4
Sample C Male 1086.5
Sample D Male 1416.7

SPINAL CORD - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1355.8
Mouse sample Sample description nTPM
Spinal cord
nTPM: 1355.8
Samples: 4

Max nTPM: 1417.3
Min nTPM: 1282.6
Sample A 1346.5
Sample B 1376.9
Sample C 1282.6
Sample D 1417.3

SPINAL CORD - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1059.8
Rat sample Sample description nTPM
Ventral spinal cord
nTPM: 1059.8
Samples: 4

Max nTPM: 1175.4
Min nTPM: 890.6
Sample A 1168.4
Sample A 1004.9
Sample A 890.6
Sample A 1175.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.