A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.5
nTPM
Monaco:
28.0
nTPM
Schmiedel:
56.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.5
HPA sample
nTPM
NK-cell nTPM: 6.5
Samples: 6
Max nTPM: 12.4
Min nTPM: 2.1
P10809_1013
6.1
P10809_1033
12.4
P10809_1052
3.1
P10809_1071
10.5
P10809_1093
2.1
P10809_1103
4.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.0
Monaco sample
nTPM
NK-cell nTPM: 28.0
Samples: 4
Max nTPM: 48.5
Min nTPM: 19.2
RHH5316_R3683
24.1
RHH5224_R3596
20.2
RHH5253_R3625
19.2
RHH5282_R3654
48.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
56.3
Schmiedel sample id
TPM
NK-cell TPM: 56.3
Samples: 90
Max TPM: 90.5
Min TPM: 32.5
NK_1
90.5
NK_2
88.0
NK_3
87.0
NK_4
85.2
NK_5
81.4
NK_6
81.0
NK_7
77.6
NK_8
76.5
NK_9
73.9
NK_10
73.5
NK_11
73.0
NK_12
72.2
NK_13
71.8
NK_14
71.0
NK_15
70.9
NK_16
70.9
NK_17
67.9
NK_18
66.8
NK_19
66.5
NK_20
66.1
NK_21
65.9
NK_22
65.9
NK_23
65.8
NK_24
64.3
NK_25
64.1
NK_26
64.0
NK_27
63.5
NK_28
63.2
NK_29
62.9
NK_30
62.0
NK_31
62.0
NK_32
60.2
NK_33
60.2
NK_34
60.2
NK_35
59.5
NK_36
58.7
NK_37
58.5
NK_38
56.1
NK_39
55.5
NK_40
55.5
NK_41
55.3
NK_42
55.3
NK_43
55.2
NK_44
54.9
NK_45
54.6
NK_46
54.6
NK_47
54.5
NK_48
54.5
NK_49
54.5
NK_50
54.0
NK_51
53.6
NK_52
53.5
NK_53
53.4
NK_54
53.4
NK_55
51.4
NK_56
51.2
NK_57
51.0
NK_58
50.9
NK_59
50.7
NK_60
50.2
NK_61
50.2
NK_62
49.1
NK_63
48.6
NK_64
48.0
NK_65
48.0
NK_66
47.4
NK_67
47.3
NK_68
46.8
NK_69
46.2
NK_70
45.8
NK_71
44.6
NK_72
44.3
NK_73
43.9
NK_74
43.4
NK_75
42.8
NK_76
41.6
NK_77
41.2
NK_78
40.7
NK_79
40.4
NK_80
39.4
NK_81
38.8
NK_82
38.6
NK_83
38.6
NK_84
38.1
NK_85
37.1
NK_86
36.6
NK_87
35.8
NK_88
35.5
NK_89
33.5
NK_90
32.5
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