A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.9
nTPM
Monaco:
19.8
nTPM
Schmiedel:
38.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.9
HPA sample
nTPM
Classical monocyte nTPM: 2.3
Samples: 6
Max nTPM: 3.6
Min nTPM: 1.3
P10809_1003
2.1
P10809_1020
3.6
P10809_1039
1.8
P10809_1058
3.0
P10809_1080
1.3
P10809_1107
1.9
Intermediate monocyte nTPM: 2.9
Samples: 6
Max nTPM: 7.7
Min nTPM: 0.2
P10809_1004
2.9
P10809_1023
7.7
P10809_1042
1.0
P10809_1061
4.7
P10809_1081
0.2
P10809_1108
0.9
Non-classical monocyte nTPM: 1.4
Samples: 5
Max nTPM: 2.3
Min nTPM: 0.0
P10809_1005
2.3
P10809_1053
2.1
P10809_1072
0.0
P10809_1082
0.4
P10809_1109
2.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.8
Monaco sample
nTPM
Classical monocyte nTPM: 16.7
Samples: 4
Max nTPM: 25.4
Min nTPM: 9.2
RHH5313_R3680
10.0
RHH5221_R3593
9.2
RHH5250_R3622
22.1
RHH5279_R3651
25.4
Intermediate monocyte nTPM: 16.5
Samples: 4
Max nTPM: 24.1
Min nTPM: 10.5
RHH5314_R3681
10.5
RHH5222_R3594
24.1
RHH5251_R3623
16.5
RHH5280_R3652
14.7
Non-classical monocyte nTPM: 19.8
Samples: 4
Max nTPM: 30.0
Min nTPM: 11.6
RHH5315_R3682
13.6
RHH5223_R3595
30.0
RHH5252_R3624
11.6
RHH5281_R3653
24.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.0
Schmiedel sample id
TPM
Classical monocyte TPM: 23.0
Samples: 91
Max TPM: 34.5
Min TPM: 15.8
MONOCYTES_1
34.5
MONOCYTES_2
30.5
MONOCYTES_3
30.4
MONOCYTES_4
29.4
MONOCYTES_5
29.0
MONOCYTES_6
28.9
MONOCYTES_7
28.0
MONOCYTES_8
27.8
MONOCYTES_9
27.6
MONOCYTES_10
27.1
MONOCYTES_11
27.1
MONOCYTES_12
26.9
MONOCYTES_13
26.9
MONOCYTES_14
26.8
MONOCYTES_15
26.7
MONOCYTES_16
26.7
MONOCYTES_17
26.7
MONOCYTES_18
26.5
MONOCYTES_19
26.5
MONOCYTES_20
26.3
MONOCYTES_21
26.1
MONOCYTES_22
25.8
MONOCYTES_23
25.7
MONOCYTES_24
25.3
MONOCYTES_25
25.2
MONOCYTES_26
25.0
MONOCYTES_27
25.0
MONOCYTES_28
24.5
MONOCYTES_29
24.4
MONOCYTES_30
24.4
MONOCYTES_31
24.2
MONOCYTES_32
24.0
MONOCYTES_33
24.0
MONOCYTES_34
23.8
MONOCYTES_35
23.8
MONOCYTES_36
23.7
MONOCYTES_37
23.7
MONOCYTES_38
23.6
MONOCYTES_39
23.6
MONOCYTES_40
23.3
MONOCYTES_41
23.3
MONOCYTES_42
23.1
MONOCYTES_43
23.1
MONOCYTES_44
22.9
MONOCYTES_45
22.9
MONOCYTES_46
22.8
MONOCYTES_47
22.7
MONOCYTES_48
22.7
MONOCYTES_49
22.6
MONOCYTES_50
22.6
MONOCYTES_51
22.5
MONOCYTES_52
22.0
MONOCYTES_53
22.0
MONOCYTES_54
21.7
MONOCYTES_55
21.6
MONOCYTES_56
21.5
MONOCYTES_57
21.4
MONOCYTES_58
21.4
MONOCYTES_59
21.1
MONOCYTES_60
21.1
MONOCYTES_61
21.1
MONOCYTES_62
21.1
MONOCYTES_63
21.0
MONOCYTES_64
21.0
MONOCYTES_65
20.9
MONOCYTES_66
20.9
MONOCYTES_67
20.8
MONOCYTES_68
20.3
MONOCYTES_69
20.3
MONOCYTES_70
20.3
MONOCYTES_71
19.9
MONOCYTES_72
19.9
MONOCYTES_73
19.8
MONOCYTES_74
19.6
MONOCYTES_75
19.3
MONOCYTES_76
19.2
MONOCYTES_77
19.1
MONOCYTES_78
19.1
MONOCYTES_79
19.0
MONOCYTES_80
18.7
MONOCYTES_81
18.5
MONOCYTES_82
18.3
MONOCYTES_83
18.3
MONOCYTES_84
17.9
MONOCYTES_85
17.8
MONOCYTES_86
17.8
MONOCYTES_87
17.7
MONOCYTES_88
17.3
MONOCYTES_89
17.1
MONOCYTES_90
16.7
MONOCYTES_91
15.8
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Non-classical monocyte TPM: 38.0
Samples: 90
Max TPM: 56.9
Min TPM: 25.0
M2_1
56.9
M2_2
56.0
M2_3
53.1
M2_4
52.9
M2_5
52.7
M2_6
50.5
M2_7
48.9
M2_8
48.4
M2_9
48.3
M2_10
47.6
M2_11
47.0
M2_12
46.5
M2_13
45.6
M2_14
45.0
M2_15
44.6
M2_16
44.6
M2_17
44.1
M2_18
43.8
M2_19
42.8
M2_20
42.7
M2_21
41.7
M2_22
41.4
M2_23
41.3
M2_24
41.0
M2_25
40.8
M2_26
40.7
M2_27
40.4
M2_28
40.3
M2_29
39.9
M2_30
39.9
M2_31
39.7
M2_32
39.5
M2_33
39.4
M2_34
39.1
M2_35
38.9
M2_36
38.7
M2_37
38.6
M2_38
38.2
M2_39
38.1
M2_40
37.9
M2_41
37.0
M2_42
37.0
M2_43
36.6
M2_44
36.3
M2_45
36.2
M2_46
36.1
M2_47
35.9
M2_48
35.8
M2_49
35.7
M2_50
35.6
M2_51
35.4
M2_52
35.3
M2_53
35.2
M2_54
35.0
M2_55
35.0
M2_56
34.5
M2_57
34.4
M2_58
34.4
M2_59
34.4
M2_60
34.3
M2_61
34.1
M2_62
34.1
M2_63
33.8
M2_64
33.7
M2_65
33.6
M2_66
33.6
M2_67
33.5
M2_68
33.5
M2_69
33.4
M2_70
33.3
M2_71
33.2
M2_72
33.0
M2_73
32.9
M2_74
32.6
M2_75
32.4
M2_76
32.3
M2_77
32.3
M2_78
31.9
M2_79
31.6
M2_80
31.0
M2_81
30.9
M2_82
30.6
M2_83
30.2
M2_84
30.1
M2_85
29.5
M2_86
29.4
M2_87
29.3
M2_88
28.6
M2_89
26.9
M2_90
25.0
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