A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
23.1
nTPM
Monaco:
30.9
nTPM
Schmiedel:
30.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.1
HPA sample
nTPM
NK-cell nTPM: 23.2
Samples: 6
Max nTPM: 40.3
Min nTPM: 11.9
P10809_1013
20.6
P10809_1033
12.8
P10809_1052
11.9
P10809_1071
40.3
P10809_1093
32.0
P10809_1103
21.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.9
Monaco sample
nTPM
NK-cell nTPM: 30.9
Samples: 4
Max nTPM: 34.1
Min nTPM: 23.6
RHH5316_R3683
33.2
RHH5224_R3596
32.7
RHH5253_R3625
23.6
RHH5282_R3654
34.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.3
Schmiedel sample id
TPM
NK-cell TPM: 30.3
Samples: 90
Max TPM: 44.0
Min TPM: 20.0
NK_1
44.0
NK_2
42.0
NK_3
41.8
NK_4
41.2
NK_5
37.9
NK_6
37.1
NK_7
36.7
NK_8
36.4
NK_9
36.2
NK_10
34.9
NK_11
34.7
NK_12
34.7
NK_13
34.6
NK_14
34.3
NK_15
34.0
NK_16
33.8
NK_17
33.7
NK_18
33.6
NK_19
33.5
NK_20
33.5
NK_21
33.4
NK_22
33.2
NK_23
33.1
NK_24
33.0
NK_25
32.7
NK_26
32.5
NK_27
32.4
NK_28
32.2
NK_29
32.0
NK_30
31.9
NK_31
31.9
NK_32
31.8
NK_33
31.6
NK_34
31.3
NK_35
31.3
NK_36
31.1
NK_37
31.0
NK_38
30.9
NK_39
30.9
NK_40
30.9
NK_41
30.8
NK_42
30.5
NK_43
30.3
NK_44
30.2
NK_45
30.2
NK_46
30.1
NK_47
29.8
NK_48
29.8
NK_49
29.7
NK_50
29.5
NK_51
29.3
NK_52
29.3
NK_53
29.3
NK_54
29.0
NK_55
28.9
NK_56
28.8
NK_57
28.7
NK_58
28.5
NK_59
28.3
NK_60
28.1
NK_61
28.0
NK_62
27.9
NK_63
27.9
NK_64
27.7
NK_65
27.6
NK_66
27.5
NK_67
27.4
NK_68
27.2
NK_69
27.0
NK_70
26.9
NK_71
26.8
NK_72
26.7
NK_73
26.5
NK_74
26.4
NK_75
26.3
NK_76
26.3
NK_77
26.1
NK_78
25.9
NK_79
25.9
NK_80
24.7
NK_81
24.4
NK_82
24.0
NK_83
24.0
NK_84
24.0
NK_85
24.0
NK_86
24.0
NK_87
23.8
NK_88
22.2
NK_89
20.6
NK_90
20.0
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