A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.4
nTPM
Monaco:
37.6
nTPM
Schmiedel:
26.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.4
HPA sample
nTPM
Classical monocyte nTPM: 15.4
Samples: 6
Max nTPM: 21.0
Min nTPM: 11.2
P10809_1003
11.2
P10809_1020
15.0
P10809_1039
21.0
P10809_1058
15.0
P10809_1080
14.4
P10809_1107
15.6
Intermediate monocyte nTPM: 15.4
Samples: 6
Max nTPM: 23.6
Min nTPM: 10.0
P10809_1004
11.2
P10809_1023
18.9
P10809_1042
12.3
P10809_1061
23.6
P10809_1081
16.5
P10809_1108
10.0
Non-classical monocyte nTPM: 12.0
Samples: 5
Max nTPM: 18.2
Min nTPM: 0.6
P10809_1005
14.3
P10809_1053
11.7
P10809_1072
0.6
P10809_1082
18.2
P10809_1109
15.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.6
Monaco sample
nTPM
Classical monocyte nTPM: 37.6
Samples: 4
Max nTPM: 41.6
Min nTPM: 32.9
RHH5313_R3680
34.9
RHH5221_R3593
41.1
RHH5250_R3622
41.6
RHH5279_R3651
32.9
Intermediate monocyte nTPM: 36.6
Samples: 4
Max nTPM: 52.9
Min nTPM: 23.7
RHH5314_R3681
40.8
RHH5222_R3594
52.9
RHH5251_R3623
23.7
RHH5280_R3652
28.8
Non-classical monocyte nTPM: 34.8
Samples: 4
Max nTPM: 38.2
Min nTPM: 29.4
RHH5315_R3682
38.2
RHH5223_R3595
35.4
RHH5252_R3624
29.4
RHH5281_R3653
36.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.4
Schmiedel sample id
TPM
Classical monocyte TPM: 19.7
Samples: 91
Max TPM: 26.8
Min TPM: 14.6
MONOCYTES_1
26.8
MONOCYTES_2
26.4
MONOCYTES_3
26.1
MONOCYTES_4
25.4
MONOCYTES_5
25.4
MONOCYTES_6
24.7
MONOCYTES_7
24.5
MONOCYTES_8
24.5
MONOCYTES_9
24.1
MONOCYTES_10
24.0
MONOCYTES_11
24.0
MONOCYTES_12
23.8
MONOCYTES_13
23.6
MONOCYTES_14
23.6
MONOCYTES_15
23.5
MONOCYTES_16
23.2
MONOCYTES_17
23.2
MONOCYTES_18
22.9
MONOCYTES_19
22.3
MONOCYTES_20
22.1
MONOCYTES_21
22.1
MONOCYTES_22
22.0
MONOCYTES_23
21.9
MONOCYTES_24
21.5
MONOCYTES_25
21.4
MONOCYTES_26
21.4
MONOCYTES_27
21.3
MONOCYTES_28
21.2
MONOCYTES_29
21.1
MONOCYTES_30
21.1
MONOCYTES_31
21.0
MONOCYTES_32
20.6
MONOCYTES_33
20.3
MONOCYTES_34
20.1
MONOCYTES_35
20.1
MONOCYTES_36
20.1
MONOCYTES_37
19.8
MONOCYTES_38
19.8
MONOCYTES_39
19.8
MONOCYTES_40
19.7
MONOCYTES_41
19.6
MONOCYTES_42
19.2
MONOCYTES_43
19.0
MONOCYTES_44
19.0
MONOCYTES_45
18.9
MONOCYTES_46
18.9
MONOCYTES_47
18.9
MONOCYTES_48
18.8
MONOCYTES_49
18.7
MONOCYTES_50
18.7
MONOCYTES_51
18.6
MONOCYTES_52
18.6
MONOCYTES_53
18.4
MONOCYTES_54
18.4
MONOCYTES_55
18.3
MONOCYTES_56
18.3
MONOCYTES_57
18.3
MONOCYTES_58
18.3
MONOCYTES_59
18.2
MONOCYTES_60
18.1
MONOCYTES_61
17.9
MONOCYTES_62
17.8
MONOCYTES_63
17.8
MONOCYTES_64
17.6
MONOCYTES_65
17.6
MONOCYTES_66
17.6
MONOCYTES_67
17.6
MONOCYTES_68
17.5
MONOCYTES_69
17.4
MONOCYTES_70
17.4
MONOCYTES_71
17.4
MONOCYTES_72
17.3
MONOCYTES_73
17.3
MONOCYTES_74
17.1
MONOCYTES_75
17.1
MONOCYTES_76
17.0
MONOCYTES_77
16.6
MONOCYTES_78
16.5
MONOCYTES_79
16.4
MONOCYTES_80
16.4
MONOCYTES_81
16.1
MONOCYTES_82
15.7
MONOCYTES_83
15.7
MONOCYTES_84
15.7
MONOCYTES_85
15.7
MONOCYTES_86
15.5
MONOCYTES_87
15.2
MONOCYTES_88
15.2
MONOCYTES_89
15.1
MONOCYTES_90
15.0
MONOCYTES_91
14.6
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Non-classical monocyte TPM: 26.4
Samples: 90
Max TPM: 40.6
Min TPM: 20.0
M2_1
40.6
M2_2
38.0
M2_3
37.8
M2_4
36.6
M2_5
34.8
M2_6
34.3
M2_7
33.5
M2_8
33.0
M2_9
32.8
M2_10
32.8
M2_11
31.9
M2_12
31.7
M2_13
31.6
M2_14
31.5
M2_15
31.2
M2_16
31.0
M2_17
30.4
M2_18
30.3
M2_19
29.6
M2_20
29.5
M2_21
29.2
M2_22
29.1
M2_23
28.8
M2_24
28.5
M2_25
28.5
M2_26
28.0
M2_27
27.8
M2_28
27.3
M2_29
27.3
M2_30
27.3
M2_31
27.2
M2_32
27.1
M2_33
26.8
M2_34
26.6
M2_35
26.4
M2_36
26.3
M2_37
26.3
M2_38
26.2
M2_39
26.2
M2_40
26.2
M2_41
25.7
M2_42
25.6
M2_43
25.5
M2_44
25.4
M2_45
25.1
M2_46
25.1
M2_47
25.0
M2_48
25.0
M2_49
24.9
M2_50
24.9
M2_51
24.9
M2_52
24.9
M2_53
24.8
M2_54
24.6
M2_55
24.6
M2_56
24.6
M2_57
24.6
M2_58
24.3
M2_59
24.2
M2_60
24.2
M2_61
24.0
M2_62
24.0
M2_63
23.7
M2_64
23.6
M2_65
23.6
M2_66
23.4
M2_67
23.2
M2_68
23.1
M2_69
23.1
M2_70
22.7
M2_71
22.5
M2_72
22.5
M2_73
22.4
M2_74
22.4
M2_75
22.4
M2_76
22.4
M2_77
22.2
M2_78
21.8
M2_79
21.8
M2_80
21.6
M2_81
21.6
M2_82
21.6
M2_83
21.2
M2_84
21.1
M2_85
21.0
M2_86
20.8
M2_87
20.8
M2_88
20.7
M2_89
20.4
M2_90
20.0
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