MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:131.2 nTPM
HPA Brain:115.9 nTPM
GTEx:131.2 nTPM
FANTOM5:157.1 Scaled Tags Per Million
Pig:187.1 nTPM
Mouse:514.8 nTPM
Allen mouse:15.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 115.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 85.5
2411 Female, age 72, unknown 113.6
2019 Male, age 18, unknown 103.6
1827 Male, age 72, unknown 94.3
1870 Female, age 42, unknown 90.1
2219 Male, age 76, both hemispheres 82.0
1833 Male, age 53, unknown 77.7
2586 Male, age 75, left hemisphere 76.1
1830 Male, age 51, unknown 75.3
2666 Male, age 74, left hemisphere 73.3
2828 Female, age 72, unknown 68.6
Dorsal raphe nucleus
nTPM: 94.0
2298 Female, age 72, unknown 120.1
2750 Male, age 76, both hemispheres 113.3
2047 Male, age 72, unknown 81.0
2016 Female, age 72, unknown 78.0
1828 Male, age 53, unknown 77.4
Inferior colliculus
nTPM: 76.8
2097 Female, age 72, unknown 109.2
1890 Male, age 53, unknown 78.6
1848 Female, age 42, unknown 65.0
2849 Male, age 72, unknown 54.2
Median raphe nucleus
nTPM: 115.9
2220 Male, age 76, midline 115.9
Periaquaductal grey, anterior
nTPM: 99.4
2502 Female, age 75, unknown 104.6
1947 Male, age 18, unknown 100.6
1795 Male, age 51, unknown 93.1
Periaquaductal grey, dorsal
nTPM: 81.2
1831 Male, age 72, unknown 90.7
2464 Female, age 72, unknown 80.0
1840 Male, age 53, unknown 78.2
2850 Male, age 76, both hemispheres 75.9
Periaquaductal grey, lateral
nTPM: 72.3
2272 Male, age 74, both hemispheres 82.4
2053 Male, age 18, unknown 77.9
2140 Male, age 76, both hemispheres 56.7
Pretectal area
nTPM: 103.5
1944 Female, age 72, unknown 138.4
1816 Male, age 51, unknown 135.5
2007 Male, age 72, unknown 128.0
1817 Female, age 42, unknown 125.5
1815 Male, age 53, unknown 117.8
2224 Female, age 72, unknown 103.2
2667 Female, age 75, unknown 93.1
2273 Male, age 74, both hemispheres 91.5
2825 Male, age 18, unknown 74.0
2407 Male, age 75, both hemispheres 67.3
2316 Male, age 76, right hemisphere 63.8
Red nucleus
nTPM: 87.3
1821 Female, age 72, unknown 117.2
1954 Female, age 42, unknown 95.3
1904 Male, age 53, unknown 94.3
2725 Female, age 75, unknown 88.0
2503 Female, age 72, unknown 87.7
1865 Male, age 51, unknown 86.8
2785 Male, age 18, unknown 86.4
2584 Male, age 75, left hemisphere 80.5
2227 Male, age 72, unknown 80.0
2769 Male, age 72, unknown 79.8
2823 Male, age 76, right hemisphere 78.5
2588 Male, age 74, left hemisphere 73.5
Substantia nigra
nTPM: 110.1
2241 Male, age 72, unknown 152.8
2409 Female, age 72, unknown 130.0
1916 Female, age 42, unknown 126.1
1889 Female, age 72, unknown 122.3
1941 Male, age 53, unknown 119.0
1851 Male, age 51, unknown 111.0
2583 Male, age 75, right hemisphere 88.6
2699 Male, age 18, unknown 85.9
2590 Female, age 75, unknown 85.2
2665 Male, age 74, both hemispheres 80.1
Superior colliculus
nTPM: 85.6
2087 Female, age 72, unknown 111.9
2668 Female, age 75, unknown 106.9
2261 Male, age 18, unknown 105.6
2587 Male, age 74, left hemisphere 84.3
1796 Male, age 53, unknown 83.4
1913 Female, age 42, unknown 82.0
1839 Male, age 51, unknown 71.8
2664 Male, age 75, both hemispheres 71.1
1895 Male, age 76, right hemisphere 70.8
1995 Male, age 72, unknown 67.7
Ventral tegmental area
nTPM: 103.9
2410 Female, age 72, unknown 122.3
2218 Male, age 76, both hemispheres 113.4
1942 Male, age 51, unknown 103.5
1915 Female, age 42, unknown 101.6
2021 Male, age 53, unknown 93.1
2223 Female, age 72, unknown 89.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 131.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 131.2
Samples: 183

Max nTPM: 329.9
Min nTPM: 53.6
Std nTPM: 50.0
Median nTPM: 125.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 329.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 307.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 294.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 287.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 279.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 253.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 251.1
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 248.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 244.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 228.7
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 215.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 157.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 157.1
FF:10158-103A5 76 years, female 157.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 187.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 162.6
Samples: 4

Max nTPM: 230.9
Min nTPM: 95.7
Sample A Female 230.9
Sample B Female 126.7
Sample C Male 197.1
Sample D Male 95.7
Midbrain
nTPM: 185.8
Samples: 4

Max nTPM: 232.9
Min nTPM: 144.2
Sample A Female 144.2
Sample B Female 174.8
Sample C Male 232.9
Sample D Male 191.2
Periaqueductal gray
nTPM: 139.4
Samples: 3

Max nTPM: 156.3
Min nTPM: 126.3
Sample B Female 126.3
Sample C Male 156.3
Sample D Male 135.5
Superior colliculi
nTPM: 187.1
Samples: 4

Max nTPM: 236.5
Min nTPM: 114.3
Sample A Female 215.1
Sample B Female 114.3
Sample C Male 236.5
Sample D Male 182.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 514.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 514.8
Samples: 4

Max nTPM: 531.2
Min nTPM: 501.3
Sample A Male 504.7
Sample B Male 521.9
Sample C Female 501.3
Sample D Female 531.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 15.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.7
583562 Antisense, RP_040831_02_H12, Mouse strain C57BL/6J (56 days, male) 19.4
81599674 Antisense, RP_071219_04_H02, Mouse strain C57BL/6J (56 days, male) 11.9

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