MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.2 nTPM
HPA Brain:105.2 nTPM
GTEx:17.2 nTPM
FANTOM5:86.1 Scaled Tags Per Million
Pig:67.8 nTPM
Mouse:63.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 105.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 75.9
2586 Male, age 75, left hemisphere 106.3
2666 Male, age 74, left hemisphere 88.0
2219 Male, age 76, both hemispheres 76.5
1870 Female, age 42, unknown 76.3
1827 Male, age 72, unknown 75.8
1833 Male, age 53, unknown 75.5
2411 Female, age 72, unknown 73.0
1830 Male, age 51, unknown 66.9
2828 Female, age 72, unknown 66.6
2019 Male, age 18, unknown 53.9
Dorsal raphe nucleus
nTPM: 86.3
2047 Male, age 72, unknown 108.9
2298 Female, age 72, unknown 90.1
1828 Male, age 53, unknown 84.7
2750 Male, age 76, both hemispheres 81.0
2016 Female, age 72, unknown 67.0
Inferior colliculus
nTPM: 68.6
2849 Male, age 72, unknown 80.4
1848 Female, age 42, unknown 72.1
2097 Female, age 72, unknown 63.8
1890 Male, age 53, unknown 58.2
Median raphe nucleus
nTPM: 105.2
2220 Male, age 76, midline 105.2
Periaquaductal grey, anterior
nTPM: 90.7
1947 Male, age 18, unknown 104.9
1795 Male, age 51, unknown 89.6
2502 Female, age 75, unknown 77.6
Periaquaductal grey, dorsal
nTPM: 73.2
1840 Male, age 53, unknown 91.2
2850 Male, age 76, both hemispheres 72.5
2464 Female, age 72, unknown 67.1
1831 Male, age 72, unknown 62.1
Periaquaductal grey, lateral
nTPM: 74.5
2272 Male, age 74, both hemispheres 78.6
2140 Male, age 76, both hemispheres 74.8
2053 Male, age 18, unknown 70.0
Pretectal area
nTPM: 69.5
2224 Female, age 72, unknown 87.9
2825 Male, age 18, unknown 87.9
1816 Male, age 51, unknown 70.7
2007 Male, age 72, unknown 68.8
2407 Male, age 75, both hemispheres 66.6
1944 Female, age 72, unknown 66.2
2667 Female, age 75, unknown 65.1
1815 Male, age 53, unknown 63.6
2316 Male, age 76, right hemisphere 63.5
1817 Female, age 42, unknown 62.8
2273 Male, age 74, both hemispheres 61.7
Red nucleus
nTPM: 66.5
1954 Female, age 42, unknown 79.3
2584 Male, age 75, left hemisphere 72.8
2725 Female, age 75, unknown 71.5
2823 Male, age 76, right hemisphere 70.0
2769 Male, age 72, unknown 69.7
1904 Male, age 53, unknown 67.2
2227 Male, age 72, unknown 66.6
2588 Male, age 74, left hemisphere 64.2
1821 Female, age 72, unknown 63.4
2503 Female, age 72, unknown 60.1
1865 Male, age 51, unknown 57.8
2785 Male, age 18, unknown 55.2
Substantia nigra
nTPM: 86.5
1916 Female, age 42, unknown 119.5
1851 Male, age 51, unknown 98.9
2665 Male, age 74, both hemispheres 97.8
2241 Male, age 72, unknown 89.2
2699 Male, age 18, unknown 87.6
2590 Female, age 75, unknown 80.5
2409 Female, age 72, unknown 75.8
1941 Male, age 53, unknown 74.2
1889 Female, age 72, unknown 71.9
2583 Male, age 75, right hemisphere 69.8
Superior colliculus
nTPM: 68.5
1796 Male, age 53, unknown 81.8
2668 Female, age 75, unknown 81.5
2261 Male, age 18, unknown 78.1
1839 Male, age 51, unknown 77.5
2664 Male, age 75, both hemispheres 69.3
1895 Male, age 76, right hemisphere 68.3
2587 Male, age 74, left hemisphere 64.6
2087 Female, age 72, unknown 63.5
1913 Female, age 42, unknown 53.7
1995 Male, age 72, unknown 46.6
Ventral tegmental area
nTPM: 89.9
2218 Male, age 76, both hemispheres 96.6
1915 Female, age 42, unknown 94.7
2410 Female, age 72, unknown 90.4
2223 Female, age 72, unknown 88.5
1942 Male, age 51, unknown 84.6
2021 Male, age 53, unknown 84.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.2
Samples: 183

Max nTPM: 40.6
Min nTPM: 6.9
Std nTPM: 7.5
Median nTPM: 15.5
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 40.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 38.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 38.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 37.3
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 36.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 35.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 35.5
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 35.4
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 35.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 34.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 34.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 86.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 86.1
FF:10158-103A5 76 years, female 86.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 67.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 67.8
Samples: 4

Max nTPM: 91.4
Min nTPM: 38.5
Sample A Female 89.4
Sample B Female 51.8
Sample C Male 91.4
Sample D Male 38.5
Midbrain
nTPM: 64.9
Samples: 4

Max nTPM: 81.5
Min nTPM: 42.4
Sample A Female 42.4
Sample B Female 56.7
Sample C Male 79.1
Sample D Male 81.5
Periaqueductal gray
nTPM: 59.9
Samples: 3

Max nTPM: 76.8
Min nTPM: 51.5
Sample B Female 51.5
Sample C Male 76.8
Sample D Male 51.5
Superior colliculi
nTPM: 59.3
Samples: 4

Max nTPM: 73.1
Min nTPM: 34.8
Sample A Female 73.1
Sample B Female 34.8
Sample C Male 62.4
Sample D Male 66.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 63.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 63.6
Samples: 4

Max nTPM: 69.1
Min nTPM: 58.4
Sample A Male 61.5
Sample B Male 58.4
Sample C Female 65.4
Sample D Female 69.1

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