MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.8 nTPM
HPA Brain:81.3 nTPM
GTEx:16.8 nTPM
FANTOM5:37.7 Scaled Tags Per Million
Pig:30.6 nTPM
Mouse:35.3 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 81.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.6
2586 Male, age 75, left hemisphere 58.5
2219 Male, age 76, both hemispheres 56.5
1827 Male, age 72, unknown 39.2
1830 Male, age 51, unknown 36.8
1833 Male, age 53, unknown 35.8
1870 Female, age 42, unknown 34.9
2828 Female, age 72, unknown 34.6
2411 Female, age 72, unknown 34.4
2666 Male, age 74, left hemisphere 31.2
2019 Male, age 18, unknown 24.1
Dorsal raphe nucleus
nTPM: 68.0
1828 Male, age 53, unknown 87.3
2047 Male, age 72, unknown 82.6
2016 Female, age 72, unknown 71.4
2298 Female, age 72, unknown 59.3
2750 Male, age 76, both hemispheres 39.4
Inferior colliculus
nTPM: 81.3
1890 Male, age 53, unknown 110.6
2097 Female, age 72, unknown 81.3
1848 Female, age 42, unknown 72.6
2849 Male, age 72, unknown 60.8
Median raphe nucleus
nTPM: 40.7
2220 Male, age 76, midline 40.7
Periaquaductal grey, anterior
nTPM: 40.7
1947 Male, age 18, unknown 43.9
2502 Female, age 75, unknown 40.7
1795 Male, age 51, unknown 37.5
Periaquaductal grey, dorsal
nTPM: 47.7
1840 Male, age 53, unknown 56.8
2464 Female, age 72, unknown 52.0
2850 Male, age 76, both hemispheres 43.1
1831 Male, age 72, unknown 38.8
Periaquaductal grey, lateral
nTPM: 37.6
2272 Male, age 74, both hemispheres 44.2
2053 Male, age 18, unknown 40.5
2140 Male, age 76, both hemispheres 28.1
Pretectal area
nTPM: 39.3
2224 Female, age 72, unknown 53.1
1817 Female, age 42, unknown 50.9
2825 Male, age 18, unknown 49.2
1944 Female, age 72, unknown 47.4
2667 Female, age 75, unknown 43.5
1816 Male, age 51, unknown 42.0
2273 Male, age 74, both hemispheres 38.1
1815 Male, age 53, unknown 28.4
2407 Male, age 75, both hemispheres 28.4
2007 Male, age 72, unknown 27.2
2316 Male, age 76, right hemisphere 24.4
Red nucleus
nTPM: 43.4
1821 Female, age 72, unknown 57.1
1954 Female, age 42, unknown 56.7
2227 Male, age 72, unknown 51.4
2769 Male, age 72, unknown 50.1
2503 Female, age 72, unknown 45.8
1865 Male, age 51, unknown 44.9
2588 Male, age 74, left hemisphere 42.6
1904 Male, age 53, unknown 38.1
2823 Male, age 76, right hemisphere 37.9
2584 Male, age 75, left hemisphere 36.4
2725 Female, age 75, unknown 34.0
2785 Male, age 18, unknown 25.4
Substantia nigra
nTPM: 61.2
2699 Male, age 18, unknown 89.9
1916 Female, age 42, unknown 73.5
2241 Male, age 72, unknown 72.8
2665 Male, age 74, both hemispheres 69.7
1941 Male, age 53, unknown 63.8
2583 Male, age 75, right hemisphere 56.3
1889 Female, age 72, unknown 54.5
1851 Male, age 51, unknown 47.5
2409 Female, age 72, unknown 45.2
2590 Female, age 75, unknown 38.8
Superior colliculus
nTPM: 35.8
2668 Female, age 75, unknown 57.9
2087 Female, age 72, unknown 45.9
2261 Male, age 18, unknown 38.1
1839 Male, age 51, unknown 36.9
2664 Male, age 75, both hemispheres 35.2
1995 Male, age 72, unknown 33.0
2587 Male, age 74, left hemisphere 32.4
1895 Male, age 76, right hemisphere 27.0
1796 Male, age 53, unknown 26.0
1913 Female, age 42, unknown 25.7
Ventral tegmental area
nTPM: 42.6
2410 Female, age 72, unknown 49.6
1942 Male, age 51, unknown 46.8
1915 Female, age 42, unknown 46.3
2218 Male, age 76, both hemispheres 41.1
2021 Male, age 53, unknown 36.2
2223 Female, age 72, unknown 35.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.8
Samples: 183

Max nTPM: 74.6
Min nTPM: 1.5
Std nTPM: 11.5
Median nTPM: 14.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 74.6
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 54.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 48.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 46.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 46.1
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 43.6
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 42.2
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 41.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 41.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 40.9
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 40.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 37.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.7
FF:10158-103A5 76 years, female 37.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 30.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.1
Samples: 4

Max nTPM: 30.6
Min nTPM: 22.7
Sample A Female 24.4
Sample B Female 22.7
Sample C Male 26.7
Sample D Male 30.6
Midbrain
nTPM: 30.4
Samples: 4

Max nTPM: 39.8
Min nTPM: 8.1
Sample A Female 8.1
Sample B Female 39.8
Sample C Male 36.6
Sample D Male 36.9
Periaqueductal gray
nTPM: 30.6
Samples: 3

Max nTPM: 39.9
Min nTPM: 25.2
Sample B Female 39.9
Sample C Male 26.6
Sample D Male 25.2
Superior colliculi
nTPM: 29.0
Samples: 4

Max nTPM: 33.9
Min nTPM: 17.4
Sample A Female 30.8
Sample B Female 17.4
Sample C Male 33.8
Sample D Male 33.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 35.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.3
Samples: 4

Max nTPM: 36.3
Min nTPM: 32.5
Sample A Male 32.5
Sample B Male 36.3
Sample C Female 36.2
Sample D Female 36.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
2341 Antisense, RP_040507_02_D07, Mouse strain C57BL/6J (56 days, male) 0.0
2342 Antisense, RP_040507_02_D07, Mouse strain C57BL/6J (56 days, male) 0.0

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