MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.7 nTPM
HPA Brain:93.6 nTPM
GTEx:21.7 nTPM
FANTOM5:84.0 Scaled Tags Per Million
Pig:70.7 nTPM
Mouse:57.3 nTPM
Allen mouse:14.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 93.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 86.4
2666 Male, age 74, left hemisphere 92.1
2586 Male, age 75, left hemisphere 91.8
2019 Male, age 18, unknown 91.1
1833 Male, age 53, unknown 90.5
1830 Male, age 51, unknown 89.3
1827 Male, age 72, unknown 86.5
1870 Female, age 42, unknown 86.5
2828 Female, age 72, unknown 81.9
2411 Female, age 72, unknown 78.0
2219 Male, age 76, both hemispheres 76.2
Dorsal raphe nucleus
nTPM: 82.4
2047 Male, age 72, unknown 87.9
2750 Male, age 76, both hemispheres 84.3
1828 Male, age 53, unknown 83.8
2016 Female, age 72, unknown 82.3
2298 Female, age 72, unknown 73.7
Inferior colliculus
nTPM: 82.9
2849 Male, age 72, unknown 93.7
1848 Female, age 42, unknown 81.7
2097 Female, age 72, unknown 78.7
1890 Male, age 53, unknown 77.7
Median raphe nucleus
nTPM: 91.8
2220 Male, age 76, midline 91.8
Periaquaductal grey, anterior
nTPM: 85.5
2502 Female, age 75, unknown 91.1
1947 Male, age 18, unknown 89.6
1795 Male, age 51, unknown 75.8
Periaquaductal grey, dorsal
nTPM: 82.1
2850 Male, age 76, both hemispheres 97.2
1840 Male, age 53, unknown 83.7
1831 Male, age 72, unknown 77.4
2464 Female, age 72, unknown 70.2
Periaquaductal grey, lateral
nTPM: 83.8
2140 Male, age 76, both hemispheres 88.2
2053 Male, age 18, unknown 84.9
2272 Male, age 74, both hemispheres 78.4
Pretectal area
nTPM: 85.4
1817 Female, age 42, unknown 96.8
1815 Male, age 53, unknown 95.1
1816 Male, age 51, unknown 92.2
2407 Male, age 75, both hemispheres 91.7
1944 Female, age 72, unknown 88.0
2007 Male, age 72, unknown 87.9
2825 Male, age 18, unknown 85.5
2224 Female, age 72, unknown 80.3
2667 Female, age 75, unknown 75.4
2273 Male, age 74, both hemispheres 74.0
2316 Male, age 76, right hemisphere 72.8
Red nucleus
nTPM: 87.1
2588 Male, age 74, left hemisphere 96.3
2584 Male, age 75, left hemisphere 95.9
1821 Female, age 72, unknown 95.3
1865 Male, age 51, unknown 93.3
2725 Female, age 75, unknown 86.0
2785 Male, age 18, unknown 85.8
1954 Female, age 42, unknown 85.6
1904 Male, age 53, unknown 85.3
2503 Female, age 72, unknown 85.1
2823 Male, age 76, right hemisphere 82.0
2227 Male, age 72, unknown 78.5
2769 Male, age 72, unknown 76.2
Substantia nigra
nTPM: 93.6
2241 Male, age 72, unknown 102.4
1916 Female, age 42, unknown 102.3
2409 Female, age 72, unknown 100.9
1851 Male, age 51, unknown 95.5
2665 Male, age 74, both hemispheres 94.0
2590 Female, age 75, unknown 92.2
2699 Male, age 18, unknown 91.0
1889 Female, age 72, unknown 89.1
1941 Male, age 53, unknown 85.6
2583 Male, age 75, right hemisphere 82.5
Superior colliculus
nTPM: 86.3
2587 Male, age 74, left hemisphere 102.7
2668 Female, age 75, unknown 92.8
1796 Male, age 53, unknown 88.0
1839 Male, age 51, unknown 86.8
1895 Male, age 76, right hemisphere 85.1
2664 Male, age 75, both hemispheres 84.6
1995 Male, age 72, unknown 82.9
1913 Female, age 42, unknown 81.2
2087 Female, age 72, unknown 80.3
2261 Male, age 18, unknown 78.8
Ventral tegmental area
nTPM: 84.6
2218 Male, age 76, both hemispheres 91.4
1915 Female, age 42, unknown 86.9
2223 Female, age 72, unknown 86.9
2410 Female, age 72, unknown 86.6
2021 Male, age 53, unknown 79.7
1942 Male, age 51, unknown 76.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 21.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.7
Samples: 183

Max nTPM: 33.8
Min nTPM: 10.9
Std nTPM: 3.9
Median nTPM: 21.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 33.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 31.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 31.3
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 31.1
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 31.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 30.4
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 30.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 29.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 28.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 28.1
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 28.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 84.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.0
FF:10158-103A5 76 years, female 84.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 70.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 68.0
Samples: 4

Max nTPM: 70.8
Min nTPM: 62.6
Sample A Female 70.8
Sample B Female 62.6
Sample C Male 69.0
Sample D Male 69.7
Midbrain
nTPM: 70.7
Samples: 4

Max nTPM: 84.1
Min nTPM: 62.1
Sample A Female 84.1
Sample B Female 64.2
Sample C Male 72.4
Sample D Male 62.1
Periaqueductal gray
nTPM: 60.6
Samples: 3

Max nTPM: 64.0
Min nTPM: 56.3
Sample B Female 64.0
Sample C Male 61.5
Sample D Male 56.3
Superior colliculi
nTPM: 68.1
Samples: 4

Max nTPM: 69.9
Min nTPM: 64.4
Sample A Female 68.9
Sample B Female 69.9
Sample C Male 69.0
Sample D Male 64.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 57.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 57.3
Samples: 4

Max nTPM: 62.2
Min nTPM: 46.6
Sample A Male 46.6
Sample B Male 62.2
Sample C Female 61.0
Sample D Female 59.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.3
67815967 Antisense, RP_040920_02_D10, Mouse strain C57BL/6J (56 days, male) 14.3

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