MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.7 nTPM
HPA Brain:33.3 nTPM
GTEx:18.7 nTPM
FANTOM5:72.0 Scaled Tags Per Million
Pig:57.9 nTPM
Mouse:39.8 nTPM
Allen mouse:0.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 33.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.3
1870 Female, age 42, unknown 42.7
1833 Male, age 53, unknown 37.0
2411 Female, age 72, unknown 36.6
2019 Male, age 18, unknown 36.0
1830 Male, age 51, unknown 35.0
2219 Male, age 76, both hemispheres 29.7
1827 Male, age 72, unknown 29.5
2828 Female, age 72, unknown 28.7
2586 Male, age 75, left hemisphere 24.4
2666 Male, age 74, left hemisphere 23.7
Dorsal raphe nucleus
nTPM: 30.2
2750 Male, age 76, both hemispheres 34.1
2016 Female, age 72, unknown 32.6
1828 Male, age 53, unknown 30.4
2298 Female, age 72, unknown 27.4
2047 Male, age 72, unknown 26.3
Inferior colliculus
nTPM: 30.8
2097 Female, age 72, unknown 32.2
1848 Female, age 42, unknown 31.1
2849 Male, age 72, unknown 30.0
1890 Male, age 53, unknown 29.8
Median raphe nucleus
nTPM: 27.2
2220 Male, age 76, midline 27.2
Periaquaductal grey, anterior
nTPM: 29.3
1947 Male, age 18, unknown 34.2
2502 Female, age 75, unknown 28.7
1795 Male, age 51, unknown 25.0
Periaquaductal grey, dorsal
nTPM: 30.2
2850 Male, age 76, both hemispheres 32.9
2464 Female, age 72, unknown 31.5
1840 Male, age 53, unknown 30.2
1831 Male, age 72, unknown 26.4
Periaquaductal grey, lateral
nTPM: 29.5
2272 Male, age 74, both hemispheres 31.3
2140 Male, age 76, both hemispheres 28.8
2053 Male, age 18, unknown 28.3
Pretectal area
nTPM: 31.7
2273 Male, age 74, both hemispheres 36.4
1817 Female, age 42, unknown 35.0
2224 Female, age 72, unknown 34.2
1815 Male, age 53, unknown 33.6
2667 Female, age 75, unknown 32.5
2007 Male, age 72, unknown 31.9
1944 Female, age 72, unknown 30.2
1816 Male, age 51, unknown 29.2
2316 Male, age 76, right hemisphere 29.1
2825 Male, age 18, unknown 28.8
2407 Male, age 75, both hemispheres 27.7
Red nucleus
nTPM: 33.3
1821 Female, age 72, unknown 39.4
2725 Female, age 75, unknown 37.2
1865 Male, age 51, unknown 36.0
1904 Male, age 53, unknown 35.4
2785 Male, age 18, unknown 33.8
1954 Female, age 42, unknown 33.6
2769 Male, age 72, unknown 32.8
2823 Male, age 76, right hemisphere 32.7
2503 Female, age 72, unknown 32.6
2227 Male, age 72, unknown 32.2
2588 Male, age 74, left hemisphere 27.4
2584 Male, age 75, left hemisphere 26.8
Substantia nigra
nTPM: 29.0
2409 Female, age 72, unknown 36.5
2241 Male, age 72, unknown 33.5
1889 Female, age 72, unknown 32.1
2590 Female, age 75, unknown 30.4
1851 Male, age 51, unknown 30.1
2699 Male, age 18, unknown 28.2
2583 Male, age 75, right hemisphere 27.5
1916 Female, age 42, unknown 25.8
1941 Male, age 53, unknown 25.1
2665 Male, age 74, both hemispheres 20.5
Superior colliculus
nTPM: 30.9
1913 Female, age 42, unknown 40.5
1995 Male, age 72, unknown 38.6
1895 Male, age 76, right hemisphere 34.7
2587 Male, age 74, left hemisphere 33.0
1839 Male, age 51, unknown 31.7
1796 Male, age 53, unknown 27.7
2087 Female, age 72, unknown 27.7
2261 Male, age 18, unknown 26.0
2668 Female, age 75, unknown 25.1
2664 Male, age 75, both hemispheres 23.8
Ventral tegmental area
nTPM: 30.8
2410 Female, age 72, unknown 34.3
2223 Female, age 72, unknown 32.4
2218 Male, age 76, both hemispheres 30.5
2021 Male, age 53, unknown 29.6
1942 Male, age 51, unknown 29.5
1915 Female, age 42, unknown 28.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 18.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.7
Samples: 183

Max nTPM: 37.0
Min nTPM: 7.6
Std nTPM: 4.7
Median nTPM: 18.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 37.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 34.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 33.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 29.9
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 29.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 29.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 29.1
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 27.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 27.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 27.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 26.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 72.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.0
FF:10158-103A5 76 years, female 72.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 57.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 48.1
Samples: 4

Max nTPM: 62.9
Min nTPM: 26.5
Sample A Female 61.4
Sample B Female 26.5
Sample C Male 41.4
Sample D Male 62.9
Midbrain
nTPM: 57.9
Samples: 4

Max nTPM: 109.1
Min nTPM: 35.7
Sample A Female 109.1
Sample B Female 35.7
Sample C Male 47.0
Sample D Male 39.8
Periaqueductal gray
nTPM: 33.5
Samples: 3

Max nTPM: 39.0
Min nTPM: 28.3
Sample B Female 33.3
Sample C Male 28.3
Sample D Male 39.0
Superior colliculi
nTPM: 44.6
Samples: 4

Max nTPM: 56.4
Min nTPM: 20.0
Sample A Female 56.4
Sample B Female 20.0
Sample C Male 50.1
Sample D Male 51.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 39.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.8
Samples: 4

Max nTPM: 40.5
Min nTPM: 38.8
Sample A Male 40.5
Sample B Male 39.5
Sample C Female 38.8
Sample D Female 40.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
70609233 Antisense, RP_050414_01_D10, Mouse strain C57BL/6J (56 days, male) 0.8

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