A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.4
nTPM
Monaco:
21.0
nTPM
Schmiedel:
137.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.4
HPA sample
nTPM
Memory B-cell nTPM: 1.4
Samples: 6
Max nTPM: 2.5
Min nTPM: 0.7
P10809_1017
0.7
P10809_1025
0.9
P10809_1044
2.5
P10809_1063
1.0
P10809_1092
1.6
P10809_1105
1.8
Naive B-cell nTPM: 1.3
Samples: 6
Max nTPM: 2.5
Min nTPM: 0.6
P10809_1011
1.5
P10809_1029
1.5
P10809_1048
0.6
P10809_1067
1.0
P10809_1091
0.9
P10809_1104
2.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 12.2
Samples: 4
Max nTPM: 21.9
Min nTPM: 6.8
RHH5310_R3677
6.8
RHH5218_R3590
21.9
RHH5247_R3619
7.9
RHH5276_R3648
12.2
Naive B-cell nTPM: 21.0
Samples: 4
Max nTPM: 32.9
Min nTPM: 16.3
RHH5308_R3675
17.1
RHH5216_R3588
16.3
RHH5245_R3617
32.9
RHH5274_R3646
17.5
Non-switched memory B-cell nTPM: 10.6
Samples: 4
Max nTPM: 16.0
Min nTPM: 7.9
RHH5309_R3676
7.9
RHH5217_R3589
10.2
RHH5246_R3618
8.2
RHH5275_R3647
16.0
Plasmablast nTPM: 11.6
Samples: 4
Max nTPM: 17.6
Min nTPM: 6.5
RHH5312_R3679
10.3
RHH5220_R3592
17.6
RHH5249_R3621
6.5
RHH5278_R3650
12.0
Switched memory B-cell nTPM: 10.2
Samples: 4
Max nTPM: 14.1
Min nTPM: 7.6
RHH5311_R3678
7.6
RHH5219_R3591
11.4
RHH5248_R3620
7.6
RHH5277_R3649
14.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
137.6
Schmiedel sample id
TPM
Naive B-cell TPM: 137.6
Samples: 91
Max TPM: 205.9
Min TPM: 83.8
B_CELL_NAIVE_1
205.9
B_CELL_NAIVE_2
190.4
B_CELL_NAIVE_3
183.9
B_CELL_NAIVE_4
182.6
B_CELL_NAIVE_5
179.5
B_CELL_NAIVE_6
176.8
B_CELL_NAIVE_7
175.2
B_CELL_NAIVE_8
164.5
B_CELL_NAIVE_9
163.3
B_CELL_NAIVE_10
163.1
B_CELL_NAIVE_11
160.7
B_CELL_NAIVE_12
159.8
B_CELL_NAIVE_13
159.6
B_CELL_NAIVE_14
159.2
B_CELL_NAIVE_15
157.0
B_CELL_NAIVE_16
155.0
B_CELL_NAIVE_17
154.2
B_CELL_NAIVE_18
153.5
B_CELL_NAIVE_19
151.6
B_CELL_NAIVE_20
150.3
B_CELL_NAIVE_21
150.2
B_CELL_NAIVE_22
149.8
B_CELL_NAIVE_23
148.7
B_CELL_NAIVE_24
148.3
B_CELL_NAIVE_25
148.2
B_CELL_NAIVE_26
148.0
B_CELL_NAIVE_27
147.0
B_CELL_NAIVE_28
146.2
B_CELL_NAIVE_29
146.1
B_CELL_NAIVE_30
146.0
B_CELL_NAIVE_31
144.6
B_CELL_NAIVE_32
144.1
B_CELL_NAIVE_33
143.3
B_CELL_NAIVE_34
142.9
B_CELL_NAIVE_35
141.2
B_CELL_NAIVE_36
140.8
B_CELL_NAIVE_37
140.2
B_CELL_NAIVE_38
140.0
B_CELL_NAIVE_39
139.3
B_CELL_NAIVE_40
138.5
B_CELL_NAIVE_41
137.5
B_CELL_NAIVE_42
136.9
B_CELL_NAIVE_43
136.7
B_CELL_NAIVE_44
136.5
B_CELL_NAIVE_45
136.3
B_CELL_NAIVE_46
135.4
B_CELL_NAIVE_47
135.4
B_CELL_NAIVE_48
135.0
B_CELL_NAIVE_49
134.8
B_CELL_NAIVE_50
134.4
B_CELL_NAIVE_51
134.4
B_CELL_NAIVE_52
133.4
B_CELL_NAIVE_53
133.2
B_CELL_NAIVE_54
132.8
B_CELL_NAIVE_55
132.6
B_CELL_NAIVE_56
132.5
B_CELL_NAIVE_57
131.3
B_CELL_NAIVE_58
130.8
B_CELL_NAIVE_59
130.4
B_CELL_NAIVE_60
130.1
B_CELL_NAIVE_61
129.5
B_CELL_NAIVE_62
127.6
B_CELL_NAIVE_63
127.3
B_CELL_NAIVE_64
126.6
B_CELL_NAIVE_65
125.8
B_CELL_NAIVE_66
125.6
B_CELL_NAIVE_67
124.2
B_CELL_NAIVE_68
124.0
B_CELL_NAIVE_69
123.8
B_CELL_NAIVE_70
123.5
B_CELL_NAIVE_71
123.1
B_CELL_NAIVE_72
121.2
B_CELL_NAIVE_73
120.2
B_CELL_NAIVE_74
119.9
B_CELL_NAIVE_75
119.5
B_CELL_NAIVE_76
117.7
B_CELL_NAIVE_77
116.3
B_CELL_NAIVE_78
116.3
B_CELL_NAIVE_79
116.1
B_CELL_NAIVE_80
115.7
B_CELL_NAIVE_81
115.7
B_CELL_NAIVE_82
112.7
B_CELL_NAIVE_83
110.9
B_CELL_NAIVE_84
110.4
B_CELL_NAIVE_85
107.7
B_CELL_NAIVE_86
106.2
B_CELL_NAIVE_87
104.7
B_CELL_NAIVE_88
103.9
B_CELL_NAIVE_89
101.5
B_CELL_NAIVE_90
97.7
B_CELL_NAIVE_91
83.8
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