A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.3
nTPM
Monaco:
13.3
nTPM
Schmiedel:
76.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.3
HPA sample
nTPM
Classical monocyte nTPM: 0.9
Samples: 6
Max nTPM: 1.0
Min nTPM: 0.7
P10809_1003
0.8
P10809_1020
0.8
P10809_1039
1.0
P10809_1058
0.9
P10809_1080
0.7
P10809_1107
0.9
Intermediate monocyte nTPM: 0.9
Samples: 6
Max nTPM: 2.1
Min nTPM: 0.4
P10809_1004
0.5
P10809_1023
0.8
P10809_1042
2.1
P10809_1061
1.0
P10809_1081
0.8
P10809_1108
0.4
Non-classical monocyte nTPM: 1.3
Samples: 5
Max nTPM: 3.2
Min nTPM: 0.4
P10809_1005
1.1
P10809_1053
0.4
P10809_1072
3.2
P10809_1082
0.9
P10809_1109
0.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.3
Monaco sample
nTPM
Classical monocyte nTPM: 11.8
Samples: 4
Max nTPM: 15.0
Min nTPM: 7.5
RHH5313_R3680
14.9
RHH5221_R3593
7.5
RHH5250_R3622
9.8
RHH5279_R3651
15.0
Intermediate monocyte nTPM: 13.3
Samples: 4
Max nTPM: 22.2
Min nTPM: 8.3
RHH5314_R3681
8.4
RHH5222_R3594
8.3
RHH5251_R3623
22.2
RHH5280_R3652
14.2
Non-classical monocyte nTPM: 10.0
Samples: 4
Max nTPM: 12.5
Min nTPM: 6.5
RHH5315_R3682
12.5
RHH5223_R3595
6.5
RHH5252_R3624
11.2
RHH5281_R3653
9.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
76.7
Schmiedel sample id
TPM
Classical monocyte TPM: 62.1
Samples: 91
Max TPM: 84.0
Min TPM: 46.3
MONOCYTES_1
84.0
MONOCYTES_2
82.6
MONOCYTES_3
81.1
MONOCYTES_4
79.6
MONOCYTES_5
79.3
MONOCYTES_6
79.0
MONOCYTES_7
79.0
MONOCYTES_8
76.6
MONOCYTES_9
76.3
MONOCYTES_10
74.9
MONOCYTES_11
74.8
MONOCYTES_12
72.9
MONOCYTES_13
72.8
MONOCYTES_14
72.6
MONOCYTES_15
72.5
MONOCYTES_16
72.5
MONOCYTES_17
72.0
MONOCYTES_18
71.7
MONOCYTES_19
71.5
MONOCYTES_20
70.9
MONOCYTES_21
70.1
MONOCYTES_22
69.1
MONOCYTES_23
69.0
MONOCYTES_24
67.1
MONOCYTES_25
66.4
MONOCYTES_26
66.4
MONOCYTES_27
66.1
MONOCYTES_28
65.9
MONOCYTES_29
65.9
MONOCYTES_30
65.4
MONOCYTES_31
65.4
MONOCYTES_32
65.4
MONOCYTES_33
65.1
MONOCYTES_34
65.0
MONOCYTES_35
64.6
MONOCYTES_36
64.5
MONOCYTES_37
63.4
MONOCYTES_38
62.5
MONOCYTES_39
62.4
MONOCYTES_40
62.2
MONOCYTES_41
62.1
MONOCYTES_42
62.1
MONOCYTES_43
61.8
MONOCYTES_44
61.5
MONOCYTES_45
61.3
MONOCYTES_46
60.6
MONOCYTES_47
60.0
MONOCYTES_48
60.0
MONOCYTES_49
59.6
MONOCYTES_50
59.4
MONOCYTES_51
59.3
MONOCYTES_52
59.3
MONOCYTES_53
58.5
MONOCYTES_54
57.9
MONOCYTES_55
57.6
MONOCYTES_56
57.3
MONOCYTES_57
57.3
MONOCYTES_58
57.2
MONOCYTES_59
57.0
MONOCYTES_60
56.9
MONOCYTES_61
56.8
MONOCYTES_62
56.5
MONOCYTES_63
56.3
MONOCYTES_64
55.6
MONOCYTES_65
55.4
MONOCYTES_66
55.1
MONOCYTES_67
55.0
MONOCYTES_68
54.9
MONOCYTES_69
54.7
MONOCYTES_70
54.6
MONOCYTES_71
54.4
MONOCYTES_72
54.3
MONOCYTES_73
54.1
MONOCYTES_74
53.8
MONOCYTES_75
53.8
MONOCYTES_76
53.8
MONOCYTES_77
53.5
MONOCYTES_78
53.1
MONOCYTES_79
52.7
MONOCYTES_80
52.7
MONOCYTES_81
52.5
MONOCYTES_82
52.4
MONOCYTES_83
51.9
MONOCYTES_84
49.6
MONOCYTES_85
49.5
MONOCYTES_86
49.4
MONOCYTES_87
48.7
MONOCYTES_88
47.8
MONOCYTES_89
47.6
MONOCYTES_90
47.3
MONOCYTES_91
46.3
Show allShow less
Non-classical monocyte TPM: 76.7
Samples: 90
Max TPM: 106.5
Min TPM: 50.4
M2_1
106.5
M2_2
106.2
M2_3
102.4
M2_4
102.2
M2_5
100.2
M2_6
99.5
M2_7
94.7
M2_8
94.0
M2_9
93.7
M2_10
93.7
M2_11
93.1
M2_12
91.7
M2_13
90.3
M2_14
89.2
M2_15
88.7
M2_16
88.3
M2_17
86.9
M2_18
85.7
M2_19
84.6
M2_20
83.4
M2_21
83.3
M2_22
83.2
M2_23
83.1
M2_24
83.1
M2_25
82.9
M2_26
82.5
M2_27
81.9
M2_28
80.5
M2_29
80.5
M2_30
80.3
M2_31
80.2
M2_32
79.9
M2_33
79.5
M2_34
78.6
M2_35
78.5
M2_36
78.5
M2_37
77.7
M2_38
77.3
M2_39
77.3
M2_40
77.1
M2_41
76.9
M2_42
76.2
M2_43
75.9
M2_44
75.8
M2_45
75.6
M2_46
75.3
M2_47
75.2
M2_48
75.1
M2_49
74.7
M2_50
74.0
M2_51
73.8
M2_52
73.2
M2_53
73.2
M2_54
72.9
M2_55
72.7
M2_56
72.5
M2_57
72.4
M2_58
72.4
M2_59
72.3
M2_60
71.9
M2_61
71.6
M2_62
70.7
M2_63
70.1
M2_64
69.5
M2_65
69.2
M2_66
68.8
M2_67
68.5
M2_68
68.4
M2_69
66.9
M2_70
66.9
M2_71
66.7
M2_72
66.1
M2_73
65.9
M2_74
65.7
M2_75
65.5
M2_76
65.5
M2_77
65.1
M2_78
65.0
M2_79
64.8
M2_80
64.7
M2_81
62.9
M2_82
62.7
M2_83
62.4
M2_84
62.0
M2_85
61.6
M2_86
61.5
M2_87
60.4
M2_88
59.8
M2_89
55.1
M2_90
50.4
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
