MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.5 nTPM
HPA Brain:62.0 nTPM
GTEx:22.5 nTPM
FANTOM5:56.3 Scaled Tags Per Million
Pig:45.5 nTPM
Mouse:14.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 62.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.3
2828 Female, age 72, unknown 56.0
2219 Male, age 76, both hemispheres 50.4
2586 Male, age 75, left hemisphere 47.7
1830 Male, age 51, unknown 46.6
1833 Male, age 53, unknown 43.5
2666 Male, age 74, left hemisphere 43.4
1827 Male, age 72, unknown 42.1
1870 Female, age 42, unknown 41.1
2019 Male, age 18, unknown 38.9
2411 Female, age 72, unknown 33.4
Dorsal raphe nucleus
nTPM: 47.8
2016 Female, age 72, unknown 62.7
1828 Male, age 53, unknown 51.5
2750 Male, age 76, both hemispheres 42.4
2298 Female, age 72, unknown 42.0
2047 Male, age 72, unknown 40.3
Inferior colliculus
nTPM: 38.6
1848 Female, age 42, unknown 44.1
2849 Male, age 72, unknown 42.8
1890 Male, age 53, unknown 37.1
2097 Female, age 72, unknown 30.3
Median raphe nucleus
nTPM: 33.5
2220 Male, age 76, midline 33.5
Periaquaductal grey, anterior
nTPM: 53.3
1947 Male, age 18, unknown 59.3
1795 Male, age 51, unknown 56.3
2502 Female, age 75, unknown 44.4
Periaquaductal grey, dorsal
nTPM: 53.7
2850 Male, age 76, both hemispheres 76.8
1840 Male, age 53, unknown 51.2
1831 Male, age 72, unknown 49.2
2464 Female, age 72, unknown 37.8
Periaquaductal grey, lateral
nTPM: 62.0
2140 Male, age 76, both hemispheres 73.4
2053 Male, age 18, unknown 61.0
2272 Male, age 74, both hemispheres 51.8
Pretectal area
nTPM: 53.2
2273 Male, age 74, both hemispheres 72.3
2667 Female, age 75, unknown 69.6
2224 Female, age 72, unknown 58.2
2316 Male, age 76, right hemisphere 55.2
1944 Female, age 72, unknown 52.1
1817 Female, age 42, unknown 51.5
1815 Male, age 53, unknown 51.4
2825 Male, age 18, unknown 46.2
2407 Male, age 75, both hemispheres 45.3
1816 Male, age 51, unknown 42.5
2007 Male, age 72, unknown 41.0
Red nucleus
nTPM: 41.2
1865 Male, age 51, unknown 47.4
1904 Male, age 53, unknown 44.9
1954 Female, age 42, unknown 44.6
2823 Male, age 76, right hemisphere 43.7
2227 Male, age 72, unknown 42.3
2503 Female, age 72, unknown 41.4
2769 Male, age 72, unknown 41.1
2725 Female, age 75, unknown 40.9
2785 Male, age 18, unknown 39.6
1821 Female, age 72, unknown 38.7
2588 Male, age 74, left hemisphere 38.6
2584 Male, age 75, left hemisphere 31.7
Substantia nigra
nTPM: 48.3
2699 Male, age 18, unknown 71.5
2665 Male, age 74, both hemispheres 54.6
2409 Female, age 72, unknown 52.0
1916 Female, age 42, unknown 49.5
1851 Male, age 51, unknown 48.6
2241 Male, age 72, unknown 47.1
1889 Female, age 72, unknown 45.9
2583 Male, age 75, right hemisphere 43.8
2590 Female, age 75, unknown 37.3
1941 Male, age 53, unknown 32.6
Superior colliculus
nTPM: 52.1
1995 Male, age 72, unknown 73.6
2668 Female, age 75, unknown 58.6
2664 Male, age 75, both hemispheres 57.6
1895 Male, age 76, right hemisphere 51.0
1913 Female, age 42, unknown 50.8
1839 Male, age 51, unknown 49.5
1796 Male, age 53, unknown 47.9
2087 Female, age 72, unknown 47.3
2587 Male, age 74, left hemisphere 44.4
2261 Male, age 18, unknown 40.7
Ventral tegmental area
nTPM: 50.9
2021 Male, age 53, unknown 70.1
2410 Female, age 72, unknown 52.4
2218 Male, age 76, both hemispheres 50.1
1942 Male, age 51, unknown 48.1
1915 Female, age 42, unknown 44.1
2223 Female, age 72, unknown 40.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 22.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.5
Samples: 183

Max nTPM: 42.6
Min nTPM: 5.0
Std nTPM: 8.1
Median nTPM: 21.8
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 42.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 41.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 41.0
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 40.6
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 40.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 40.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 39.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 38.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 37.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 37.0
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 36.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 56.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.3
FF:10158-103A5 76 years, female 56.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 45.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 45.5
Samples: 4

Max nTPM: 53.8
Min nTPM: 38.4
Sample A Female 53.8
Sample B Female 38.4
Sample C Male 48.5
Sample D Male 41.1
Midbrain
nTPM: 41.9
Samples: 4

Max nTPM: 62.8
Min nTPM: 30.5
Sample A Female 62.8
Sample B Female 30.5
Sample C Male 42.9
Sample D Male 31.2
Periaqueductal gray
nTPM: 32.0
Samples: 3

Max nTPM: 35.7
Min nTPM: 29.3
Sample B Female 29.3
Sample C Male 35.7
Sample D Male 31.0
Superior colliculi
nTPM: 44.2
Samples: 4

Max nTPM: 51.8
Min nTPM: 34.0
Sample A Female 48.8
Sample B Female 34.0
Sample C Male 42.0
Sample D Male 51.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 14.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.8
Samples: 4

Max nTPM: 17.0
Min nTPM: 13.1
Sample A Male 14.5
Sample B Male 13.1
Sample C Female 14.4
Sample D Female 17.0

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