MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.8 nTPM
HPA Brain:84.4 nTPM
GTEx:24.8 nTPM
FANTOM5:1.7 Scaled Tags Per Million
Pig:61.7 nTPM
Mouse:95.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 84.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.6
1827 Male, age 72, unknown 66.3
2219 Male, age 76, both hemispheres 61.5
2828 Female, age 72, unknown 60.3
2666 Male, age 74, left hemisphere 57.2
2586 Male, age 75, left hemisphere 53.9
2019 Male, age 18, unknown 51.6
1870 Female, age 42, unknown 49.6
2411 Female, age 72, unknown 49.6
1833 Male, age 53, unknown 46.1
1830 Male, age 51, unknown 40.2
Dorsal raphe nucleus
nTPM: 58.0
2298 Female, age 72, unknown 74.4
2047 Male, age 72, unknown 64.1
2750 Male, age 76, both hemispheres 61.1
1828 Male, age 53, unknown 50.7
2016 Female, age 72, unknown 39.6
Inferior colliculus
nTPM: 68.1
2097 Female, age 72, unknown 92.3
1848 Female, age 42, unknown 65.9
1890 Male, age 53, unknown 58.1
2849 Male, age 72, unknown 56.2
Median raphe nucleus
nTPM: 84.4
2220 Male, age 76, midline 84.4
Periaquaductal grey, anterior
nTPM: 76.2
2502 Female, age 75, unknown 92.5
1795 Male, age 51, unknown 76.8
1947 Male, age 18, unknown 59.2
Periaquaductal grey, dorsal
nTPM: 60.8
1840 Male, age 53, unknown 69.1
1831 Male, age 72, unknown 66.1
2464 Female, age 72, unknown 56.7
2850 Male, age 76, both hemispheres 51.2
Periaquaductal grey, lateral
nTPM: 52.1
2053 Male, age 18, unknown 57.3
2140 Male, age 76, both hemispheres 53.4
2272 Male, age 74, both hemispheres 45.7
Pretectal area
nTPM: 72.9
1944 Female, age 72, unknown 109.0
1816 Male, age 51, unknown 108.7
1817 Female, age 42, unknown 87.6
2007 Male, age 72, unknown 86.9
1815 Male, age 53, unknown 81.7
2667 Female, age 75, unknown 66.2
2224 Female, age 72, unknown 65.8
2316 Male, age 76, right hemisphere 59.2
2825 Male, age 18, unknown 54.7
2273 Male, age 74, both hemispheres 41.2
2407 Male, age 75, both hemispheres 40.5
Red nucleus
nTPM: 35.8
2785 Male, age 18, unknown 57.0
2584 Male, age 75, left hemisphere 42.9
2588 Male, age 74, left hemisphere 36.4
1821 Female, age 72, unknown 35.2
1954 Female, age 42, unknown 34.4
2503 Female, age 72, unknown 34.2
2769 Male, age 72, unknown 33.5
1904 Male, age 53, unknown 32.1
2227 Male, age 72, unknown 31.7
2823 Male, age 76, right hemisphere 31.6
2725 Female, age 75, unknown 31.1
1865 Male, age 51, unknown 29.2
Substantia nigra
nTPM: 56.8
1916 Female, age 42, unknown 79.3
2665 Male, age 74, both hemispheres 78.9
1889 Female, age 72, unknown 75.2
1941 Male, age 53, unknown 59.3
1851 Male, age 51, unknown 58.7
2241 Male, age 72, unknown 51.6
2409 Female, age 72, unknown 43.3
2699 Male, age 18, unknown 42.0
2590 Female, age 75, unknown 41.2
2583 Male, age 75, right hemisphere 38.8
Superior colliculus
nTPM: 66.8
2087 Female, age 72, unknown 92.8
2668 Female, age 75, unknown 82.9
2261 Male, age 18, unknown 78.5
1796 Male, age 53, unknown 78.4
1895 Male, age 76, right hemisphere 69.4
2664 Male, age 75, both hemispheres 58.1
1839 Male, age 51, unknown 56.3
1913 Female, age 42, unknown 52.1
2587 Male, age 74, left hemisphere 49.8
1995 Male, age 72, unknown 49.5
Ventral tegmental area
nTPM: 61.6
2218 Male, age 76, both hemispheres 82.7
1942 Male, age 51, unknown 64.4
1915 Female, age 42, unknown 62.9
2410 Female, age 72, unknown 57.5
2021 Male, age 53, unknown 55.8
2223 Female, age 72, unknown 45.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 24.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.8
Samples: 183

Max nTPM: 94.2
Min nTPM: 3.2
Std nTPM: 14.9
Median nTPM: 20.6
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 94.2
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 83.5
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 70.5
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 68.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 64.1
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 56.5
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 56.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 55.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 53.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 53.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 52.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.7
FF:10158-103A5 76 years, female 1.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 61.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 54.2
Samples: 4

Max nTPM: 85.0
Min nTPM: 15.3
Sample A Female 77.8
Sample B Female 38.8
Sample C Male 85.0
Sample D Male 15.3
Midbrain
nTPM: 61.7
Samples: 4

Max nTPM: 107.5
Min nTPM: 21.7
Sample A Female 21.7
Sample B Female 39.7
Sample C Male 107.5
Sample D Male 77.8
Periaqueductal gray
nTPM: 37.0
Samples: 3

Max nTPM: 49.0
Min nTPM: 29.3
Sample B Female 32.7
Sample C Male 49.0
Sample D Male 29.3
Superior colliculi
nTPM: 49.0
Samples: 4

Max nTPM: 59.8
Min nTPM: 30.7
Sample A Female 52.8
Sample B Female 30.7
Sample C Male 59.8
Sample D Male 52.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 95.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 95.1
Samples: 4

Max nTPM: 105.4
Min nTPM: 79.3
Sample A Male 79.3
Sample B Male 92.2
Sample C Female 103.4
Sample D Female 105.4

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