A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
17.2
nTPM
Monaco:
50.4
nTPM
Schmiedel:
49.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.2
HPA sample
nTPM
NK-cell nTPM: 17.2
Samples: 6
Max nTPM: 22.6
Min nTPM: 13.0
P10809_1013
13.0
P10809_1033
22.6
P10809_1052
19.6
P10809_1071
13.1
P10809_1093
19.1
P10809_1103
15.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
50.4
Monaco sample
nTPM
NK-cell nTPM: 50.4
Samples: 4
Max nTPM: 58.9
Min nTPM: 42.8
RHH5316_R3683
45.6
RHH5224_R3596
54.3
RHH5253_R3625
58.9
RHH5282_R3654
42.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.7
Schmiedel sample id
TPM
NK-cell TPM: 49.7
Samples: 90
Max TPM: 69.6
Min TPM: 37.4
NK_1
69.6
NK_2
64.3
NK_3
63.3
NK_4
61.6
NK_5
61.5
NK_6
60.0
NK_7
59.5
NK_8
59.2
NK_9
59.0
NK_10
58.8
NK_11
58.6
NK_12
58.3
NK_13
58.2
NK_14
57.0
NK_15
56.4
NK_16
56.2
NK_17
55.8
NK_18
55.3
NK_19
54.5
NK_20
54.2
NK_21
54.2
NK_22
53.9
NK_23
53.6
NK_24
53.4
NK_25
52.9
NK_26
52.8
NK_27
52.8
NK_28
52.6
NK_29
52.6
NK_30
52.6
NK_31
52.5
NK_32
51.8
NK_33
51.6
NK_34
51.4
NK_35
50.9
NK_36
50.8
NK_37
50.4
NK_38
50.4
NK_39
50.3
NK_40
50.3
NK_41
50.1
NK_42
49.8
NK_43
49.6
NK_44
49.6
NK_45
49.3
NK_46
49.1
NK_47
49.1
NK_48
48.6
NK_49
48.5
NK_50
47.8
NK_51
47.8
NK_52
47.7
NK_53
47.0
NK_54
47.0
NK_55
46.9
NK_56
46.8
NK_57
46.6
NK_58
46.6
NK_59
46.5
NK_60
46.3
NK_61
46.2
NK_62
46.1
NK_63
45.9
NK_64
45.9
NK_65
45.8
NK_66
45.6
NK_67
45.3
NK_68
44.7
NK_69
44.4
NK_70
44.3
NK_71
44.2
NK_72
44.1
NK_73
44.0
NK_74
43.4
NK_75
43.4
NK_76
43.1
NK_77
42.8
NK_78
42.6
NK_79
42.4
NK_80
41.6
NK_81
41.4
NK_82
41.1
NK_83
40.9
NK_84
40.9
NK_85
40.2
NK_86
40.1
NK_87
39.8
NK_88
39.6
NK_89
38.8
NK_90
37.4
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