A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
30.3
nTPM
Monaco:
81.3
nTPM
Schmiedel:
63.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.3
HPA sample
nTPM
Classical monocyte nTPM: 15.3
Samples: 6
Max nTPM: 19.8
Min nTPM: 9.7
P10809_1003
19.8
P10809_1020
17.4
P10809_1039
19.3
P10809_1058
15.3
P10809_1080
9.7
P10809_1107
10.0
Intermediate monocyte nTPM: 20.4
Samples: 6
Max nTPM: 36.4
Min nTPM: 12.6
P10809_1004
16.8
P10809_1023
21.0
P10809_1042
20.6
P10809_1061
36.4
P10809_1081
14.9
P10809_1108
12.6
Non-classical monocyte nTPM: 30.3
Samples: 5
Max nTPM: 67.7
Min nTPM: 15.1
P10809_1005
24.7
P10809_1053
24.7
P10809_1072
67.7
P10809_1082
19.2
P10809_1109
15.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
81.3
Monaco sample
nTPM
Classical monocyte nTPM: 63.8
Samples: 4
Max nTPM: 75.1
Min nTPM: 48.8
RHH5313_R3680
56.5
RHH5221_R3593
48.8
RHH5250_R3622
75.1
RHH5279_R3651
74.7
Intermediate monocyte nTPM: 69.7
Samples: 4
Max nTPM: 86.1
Min nTPM: 53.8
RHH5314_R3681
59.2
RHH5222_R3594
53.8
RHH5251_R3623
79.8
RHH5280_R3652
86.1
Non-classical monocyte nTPM: 81.3
Samples: 4
Max nTPM: 88.6
Min nTPM: 73.6
RHH5315_R3682
73.6
RHH5223_R3595
80.0
RHH5252_R3624
88.6
RHH5281_R3653
83.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
63.3
Schmiedel sample id
TPM
Classical monocyte TPM: 26.6
Samples: 91
Max TPM: 40.3
Min TPM: 16.9
MONOCYTES_1
40.3
MONOCYTES_2
37.6
MONOCYTES_3
36.0
MONOCYTES_4
35.9
MONOCYTES_5
35.3
MONOCYTES_6
34.8
MONOCYTES_7
34.7
MONOCYTES_8
33.8
MONOCYTES_9
32.6
MONOCYTES_10
32.2
MONOCYTES_11
32.1
MONOCYTES_12
32.0
MONOCYTES_13
31.8
MONOCYTES_14
31.5
MONOCYTES_15
31.2
MONOCYTES_16
31.2
MONOCYTES_17
30.9
MONOCYTES_18
30.7
MONOCYTES_19
30.5
MONOCYTES_20
30.5
MONOCYTES_21
30.4
MONOCYTES_22
30.4
MONOCYTES_23
30.1
MONOCYTES_24
29.7
MONOCYTES_25
29.6
MONOCYTES_26
29.4
MONOCYTES_27
29.4
MONOCYTES_28
29.4
MONOCYTES_29
29.1
MONOCYTES_30
28.9
MONOCYTES_31
28.8
MONOCYTES_32
28.7
MONOCYTES_33
28.5
MONOCYTES_34
28.3
MONOCYTES_35
28.1
MONOCYTES_36
27.9
MONOCYTES_37
27.7
MONOCYTES_38
27.6
MONOCYTES_39
27.6
MONOCYTES_40
27.4
MONOCYTES_41
27.3
MONOCYTES_42
27.3
MONOCYTES_43
27.2
MONOCYTES_44
27.1
MONOCYTES_45
27.1
MONOCYTES_46
27.0
MONOCYTES_47
27.0
MONOCYTES_48
26.9
MONOCYTES_49
26.8
MONOCYTES_50
26.8
MONOCYTES_51
26.6
MONOCYTES_52
26.2
MONOCYTES_53
26.1
MONOCYTES_54
26.0
MONOCYTES_55
25.7
MONOCYTES_56
25.6
MONOCYTES_57
25.2
MONOCYTES_58
25.0
MONOCYTES_59
24.5
MONOCYTES_60
24.4
MONOCYTES_61
24.3
MONOCYTES_62
24.2
MONOCYTES_63
23.6
MONOCYTES_64
23.5
MONOCYTES_65
23.5
MONOCYTES_66
23.3
MONOCYTES_67
22.7
MONOCYTES_68
22.6
MONOCYTES_69
22.4
MONOCYTES_70
22.3
MONOCYTES_71
22.2
MONOCYTES_72
22.0
MONOCYTES_73
22.0
MONOCYTES_74
21.9
MONOCYTES_75
21.8
MONOCYTES_76
21.8
MONOCYTES_77
21.7
MONOCYTES_78
21.7
MONOCYTES_79
21.6
MONOCYTES_80
21.4
MONOCYTES_81
20.4
MONOCYTES_82
20.2
MONOCYTES_83
19.5
MONOCYTES_84
19.4
MONOCYTES_85
19.0
MONOCYTES_86
18.5
MONOCYTES_87
18.2
MONOCYTES_88
17.5
MONOCYTES_89
17.3
MONOCYTES_90
17.3
MONOCYTES_91
16.9
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Non-classical monocyte TPM: 63.3
Samples: 90
Max TPM: 85.0
Min TPM: 45.9
M2_1
85.0
M2_2
84.5
M2_3
84.0
M2_4
83.2
M2_5
81.3
M2_6
80.7
M2_7
79.8
M2_8
78.0
M2_9
77.8
M2_10
75.4
M2_11
75.2
M2_12
74.9
M2_13
74.6
M2_14
74.4
M2_15
74.3
M2_16
73.5
M2_17
72.7
M2_18
72.4
M2_19
72.2
M2_20
70.8
M2_21
70.2
M2_22
69.8
M2_23
68.5
M2_24
67.5
M2_25
67.4
M2_26
67.3
M2_27
66.8
M2_28
66.5
M2_29
66.4
M2_30
66.4
M2_31
66.2
M2_32
66.0
M2_33
65.9
M2_34
65.1
M2_35
64.8
M2_36
64.4
M2_37
64.4
M2_38
64.2
M2_39
64.0
M2_40
63.7
M2_41
63.7
M2_42
63.7
M2_43
63.5
M2_44
63.0
M2_45
62.8
M2_46
62.5
M2_47
62.2
M2_48
61.9
M2_49
61.6
M2_50
61.3
M2_51
60.5
M2_52
60.3
M2_53
60.2
M2_54
60.1
M2_55
59.3
M2_56
58.8
M2_57
58.7
M2_58
58.7
M2_59
58.6
M2_60
58.6
M2_61
58.4
M2_62
58.4
M2_63
58.2
M2_64
57.7
M2_65
57.7
M2_66
57.6
M2_67
57.5
M2_68
56.5
M2_69
56.0
M2_70
56.0
M2_71
55.2
M2_72
55.1
M2_73
55.0
M2_74
55.0
M2_75
54.5
M2_76
54.0
M2_77
53.7
M2_78
53.6
M2_79
53.4
M2_80
52.6
M2_81
52.1
M2_82
51.8
M2_83
51.3
M2_84
50.7
M2_85
49.1
M2_86
48.7
M2_87
48.0
M2_88
47.3
M2_89
46.7
M2_90
45.9
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