MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:73.2 nTPM
HPA Brain:81.6 nTPM
GTEx:73.2 nTPM
FANTOM5:117.6 Scaled Tags Per Million
Pig:114.0 nTPM
Mouse:136.9 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 81.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.5
2411 Female, age 72, unknown 82.4
1827 Male, age 72, unknown 81.9
1870 Female, age 42, unknown 75.8
2019 Male, age 18, unknown 72.7
2828 Female, age 72, unknown 70.5
1833 Male, age 53, unknown 64.8
2219 Male, age 76, both hemispheres 60.3
1830 Male, age 51, unknown 59.5
2666 Male, age 74, left hemisphere 53.4
2586 Male, age 75, left hemisphere 53.3
Dorsal raphe nucleus
nTPM: 76.4
2298 Female, age 72, unknown 107.4
2750 Male, age 76, both hemispheres 73.0
2047 Male, age 72, unknown 70.8
1828 Male, age 53, unknown 66.7
2016 Female, age 72, unknown 64.2
Inferior colliculus
nTPM: 69.5
2097 Female, age 72, unknown 86.7
1848 Female, age 42, unknown 69.0
1890 Male, age 53, unknown 65.3
2849 Male, age 72, unknown 57.1
Median raphe nucleus
nTPM: 71.2
2220 Male, age 76, midline 71.2
Periaquaductal grey, anterior
nTPM: 73.5
1947 Male, age 18, unknown 79.2
1795 Male, age 51, unknown 73.7
2502 Female, age 75, unknown 67.6
Periaquaductal grey, dorsal
nTPM: 65.7
1840 Male, age 53, unknown 70.2
2464 Female, age 72, unknown 65.5
1831 Male, age 72, unknown 64.0
2850 Male, age 76, both hemispheres 63.1
Periaquaductal grey, lateral
nTPM: 75.2
2272 Male, age 74, both hemispheres 95.1
2053 Male, age 18, unknown 66.3
2140 Male, age 76, both hemispheres 64.3
Pretectal area
nTPM: 81.6
2273 Male, age 74, both hemispheres 101.9
2007 Male, age 72, unknown 96.7
1816 Male, age 51, unknown 90.9
1817 Female, age 42, unknown 89.0
1944 Female, age 72, unknown 88.8
2224 Female, age 72, unknown 85.2
1815 Male, age 53, unknown 82.0
2667 Female, age 75, unknown 80.4
2316 Male, age 76, right hemisphere 65.7
2825 Male, age 18, unknown 65.2
2407 Male, age 75, both hemispheres 52.2
Red nucleus
nTPM: 64.7
1821 Female, age 72, unknown 77.2
2785 Male, age 18, unknown 74.6
2725 Female, age 75, unknown 72.5
2503 Female, age 72, unknown 68.2
1954 Female, age 42, unknown 68.1
1904 Male, age 53, unknown 67.1
1865 Male, age 51, unknown 63.4
2823 Male, age 76, right hemisphere 62.8
2227 Male, age 72, unknown 62.3
2769 Male, age 72, unknown 60.0
2588 Male, age 74, left hemisphere 53.1
2584 Male, age 75, left hemisphere 47.8
Substantia nigra
nTPM: 71.6
1916 Female, age 42, unknown 92.8
1889 Female, age 72, unknown 83.9
1851 Male, age 51, unknown 80.3
2241 Male, age 72, unknown 77.7
1941 Male, age 53, unknown 73.6
2409 Female, age 72, unknown 72.4
2590 Female, age 75, unknown 62.5
2583 Male, age 75, right hemisphere 62.1
2699 Male, age 18, unknown 58.7
2665 Male, age 74, both hemispheres 51.6
Superior colliculus
nTPM: 70.1
2261 Male, age 18, unknown 83.7
2087 Female, age 72, unknown 78.3
1796 Male, age 53, unknown 78.2
2668 Female, age 75, unknown 75.1
2587 Male, age 74, left hemisphere 74.5
1895 Male, age 76, right hemisphere 69.9
1913 Female, age 42, unknown 67.4
1839 Male, age 51, unknown 64.0
1995 Male, age 72, unknown 61.5
2664 Male, age 75, both hemispheres 48.7
Ventral tegmental area
nTPM: 75.9
2410 Female, age 72, unknown 87.0
2218 Male, age 76, both hemispheres 81.3
1915 Female, age 42, unknown 79.7
1942 Male, age 51, unknown 71.8
2021 Male, age 53, unknown 68.6
2223 Female, age 72, unknown 66.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 73.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.2
Samples: 183

Max nTPM: 131.3
Min nTPM: 44.3
Std nTPM: 17.5
Median nTPM: 68.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 131.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 130.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 127.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 125.1
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 124.2
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 119.9
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 116.4
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 113.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 113.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 112.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 109.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 117.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 117.6
FF:10158-103A5 76 years, female 117.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 114.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 91.0
Samples: 4

Max nTPM: 116.8
Min nTPM: 68.1
Sample A Female 116.8
Sample B Female 77.1
Sample C Male 102.0
Sample D Male 68.1
Midbrain
nTPM: 108.8
Samples: 4

Max nTPM: 128.4
Min nTPM: 88.4
Sample A Female 115.2
Sample B Female 88.4
Sample C Male 128.4
Sample D Male 103.1
Periaqueductal gray
nTPM: 83.4
Samples: 3

Max nTPM: 95.0
Min nTPM: 76.1
Sample B Female 79.0
Sample C Male 95.0
Sample D Male 76.1
Superior colliculi
nTPM: 114.0
Samples: 4

Max nTPM: 136.2
Min nTPM: 91.7
Sample A Female 125.8
Sample B Female 91.7
Sample C Male 136.2
Sample D Male 102.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 136.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 136.9
Samples: 4

Max nTPM: 139.4
Min nTPM: 134.3
Sample A Male 139.4
Sample B Male 135.9
Sample C Female 134.3
Sample D Female 137.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69133674 Antisense, RP_050321_02_A07, Mouse strain C57BL/6J (56 days, male) 0.3

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