MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:66.1 nTPM
HPA Brain:42.6 nTPM
GTEx:66.1 nTPM
FANTOM5:84.2 Scaled Tags Per Million
Pig:46.1 nTPM
Mouse:128.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 42.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.6
2411 Female, age 72, unknown 48.8
1870 Female, age 42, unknown 40.3
2019 Male, age 18, unknown 37.5
1827 Male, age 72, unknown 35.5
1833 Male, age 53, unknown 33.2
1830 Male, age 51, unknown 31.4
2828 Female, age 72, unknown 30.7
2219 Male, age 76, both hemispheres 30.6
2666 Male, age 74, left hemisphere 29.5
2586 Male, age 75, left hemisphere 28.2
Dorsal raphe nucleus
nTPM: 37.5
2298 Female, age 72, unknown 46.2
2750 Male, age 76, both hemispheres 40.9
1828 Male, age 53, unknown 35.9
2047 Male, age 72, unknown 33.8
2016 Female, age 72, unknown 30.7
Inferior colliculus
nTPM: 30.2
2097 Female, age 72, unknown 39.6
1848 Female, age 42, unknown 29.0
1890 Male, age 53, unknown 28.7
2849 Male, age 72, unknown 23.6
Median raphe nucleus
nTPM: 36.8
2220 Male, age 76, midline 36.8
Periaquaductal grey, anterior
nTPM: 33.1
2502 Female, age 75, unknown 35.4
1947 Male, age 18, unknown 34.3
1795 Male, age 51, unknown 29.6
Periaquaductal grey, dorsal
nTPM: 31.7
1840 Male, age 53, unknown 32.7
1831 Male, age 72, unknown 32.1
2464 Female, age 72, unknown 31.7
2850 Male, age 76, both hemispheres 30.5
Periaquaductal grey, lateral
nTPM: 27.3
2053 Male, age 18, unknown 31.8
2272 Male, age 74, both hemispheres 25.8
2140 Male, age 76, both hemispheres 24.4
Pretectal area
nTPM: 35.9
1816 Male, age 51, unknown 42.0
1815 Male, age 53, unknown 41.6
2007 Male, age 72, unknown 40.2
2224 Female, age 72, unknown 39.5
1944 Female, age 72, unknown 39.4
1817 Female, age 42, unknown 38.2
2667 Female, age 75, unknown 36.9
2316 Male, age 76, right hemisphere 30.6
2825 Male, age 18, unknown 30.6
2273 Male, age 74, both hemispheres 29.9
2407 Male, age 75, both hemispheres 25.3
Red nucleus
nTPM: 33.7
1821 Female, age 72, unknown 49.0
1904 Male, age 53, unknown 38.7
1954 Female, age 42, unknown 36.3
2503 Female, age 72, unknown 35.1
1865 Male, age 51, unknown 34.0
2823 Male, age 76, right hemisphere 33.0
2769 Male, age 72, unknown 31.7
2725 Female, age 75, unknown 31.2
2785 Male, age 18, unknown 31.0
2227 Male, age 72, unknown 30.8
2588 Male, age 74, left hemisphere 29.5
2584 Male, age 75, left hemisphere 23.7
Substantia nigra
nTPM: 42.6
2241 Male, age 72, unknown 60.2
1916 Female, age 42, unknown 52.6
1851 Male, age 51, unknown 50.3
1889 Female, age 72, unknown 45.7
2409 Female, age 72, unknown 44.2
1941 Male, age 53, unknown 38.2
2699 Male, age 18, unknown 37.1
2590 Female, age 75, unknown 34.2
2583 Male, age 75, right hemisphere 33.6
2665 Male, age 74, both hemispheres 30.4
Superior colliculus
nTPM: 33.2
2668 Female, age 75, unknown 38.3
2587 Male, age 74, left hemisphere 36.5
2087 Female, age 72, unknown 35.7
2261 Male, age 18, unknown 34.3
1913 Female, age 42, unknown 34.2
1895 Male, age 76, right hemisphere 34.0
1796 Male, age 53, unknown 32.7
1995 Male, age 72, unknown 29.8
1839 Male, age 51, unknown 29.5
2664 Male, age 75, both hemispheres 26.7
Ventral tegmental area
nTPM: 40.1
2410 Female, age 72, unknown 47.2
1915 Female, age 42, unknown 43.5
2218 Male, age 76, both hemispheres 40.4
2223 Female, age 72, unknown 38.5
1942 Male, age 51, unknown 36.7
2021 Male, age 53, unknown 34.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 66.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 66.1
Samples: 183

Max nTPM: 105.4
Min nTPM: 30.6
Std nTPM: 12.9
Median nTPM: 64.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 105.4
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 104.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 100.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 98.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 98.4
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 98.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 97.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 97.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 95.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 93.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 92.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 84.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.2
FF:10158-103A5 76 years, female 84.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 46.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 44.2
Samples: 4

Max nTPM: 58.5
Min nTPM: 35.3
Sample A Female 58.5
Sample B Female 36.1
Sample C Male 46.8
Sample D Male 35.3
Midbrain
nTPM: 46.1
Samples: 4

Max nTPM: 58.0
Min nTPM: 39.3
Sample A Female 58.0
Sample B Female 47.0
Sample C Male 39.9
Sample D Male 39.3
Periaqueductal gray
nTPM: 35.4
Samples: 3

Max nTPM: 41.4
Min nTPM: 31.4
Sample B Female 31.4
Sample C Male 41.4
Sample D Male 33.4
Superior colliculi
nTPM: 43.1
Samples: 4

Max nTPM: 51.8
Min nTPM: 32.9
Sample A Female 51.8
Sample B Female 32.9
Sample C Male 46.9
Sample D Male 40.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 128.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 128.2
Samples: 4

Max nTPM: 131.8
Min nTPM: 126.4
Sample A Male 126.8
Sample B Male 131.8
Sample C Female 126.4
Sample D Female 127.6

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