A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2041.2
nTPM
Monaco:
373.9
nTPM
Schmiedel:
295.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2041.2
HPA sample
nTPM
NK-cell nTPM: 2041.2
Samples: 6
Max nTPM: 2785.5
Min nTPM: 769.4
P10809_1013
2785.5
P10809_1033
2354.3
P10809_1052
2020.7
P10809_1071
2150.4
P10809_1093
769.4
P10809_1103
2166.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
373.9
Monaco sample
nTPM
NK-cell nTPM: 374.0
Samples: 4
Max nTPM: 468.0
Min nTPM: 219.2
RHH5316_R3683
468.0
RHH5224_R3596
219.2
RHH5253_R3625
404.9
RHH5282_R3654
403.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
295.6
Schmiedel sample id
TPM
NK-cell TPM: 295.6
Samples: 90
Max TPM: 419.7
Min TPM: 197.9
NK_1
419.7
NK_2
410.6
NK_3
374.9
NK_4
367.4
NK_5
367.4
NK_6
363.6
NK_7
361.7
NK_8
359.0
NK_9
349.0
NK_10
343.1
NK_11
339.0
NK_12
338.9
NK_13
338.6
NK_14
337.6
NK_15
334.4
NK_16
333.2
NK_17
332.5
NK_18
331.8
NK_19
329.7
NK_20
328.5
NK_21
327.4
NK_22
327.2
NK_23
325.5
NK_24
325.3
NK_25
324.2
NK_26
322.6
NK_27
322.0
NK_28
321.3
NK_29
317.2
NK_30
317.0
NK_31
312.6
NK_32
312.2
NK_33
309.4
NK_34
308.4
NK_35
306.6
NK_36
305.6
NK_37
303.5
NK_38
302.6
NK_39
301.6
NK_40
300.6
NK_41
300.2
NK_42
300.1
NK_43
296.6
NK_44
295.2
NK_45
294.4
NK_46
294.2
NK_47
292.6
NK_48
291.8
NK_49
291.6
NK_50
291.2
NK_51
290.2
NK_52
290.2
NK_53
289.4
NK_54
287.4
NK_55
287.3
NK_56
283.3
NK_57
283.2
NK_58
278.8
NK_59
276.8
NK_60
275.6
NK_61
275.1
NK_62
270.3
NK_63
270.3
NK_64
268.0
NK_65
267.3
NK_66
267.2
NK_67
264.7
NK_68
264.1
NK_69
261.6
NK_70
260.5
NK_71
259.5
NK_72
259.5
NK_73
256.9
NK_74
255.3
NK_75
253.6
NK_76
249.8
NK_77
249.1
NK_78
248.0
NK_79
246.3
NK_80
246.3
NK_81
246.1
NK_82
245.3
NK_83
238.0
NK_84
236.7
NK_85
232.1
NK_86
231.0
NK_87
220.4
NK_88
217.2
NK_89
201.6
NK_90
197.9
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