A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1548.9
nTPM
Monaco:
625.1
nTPM
Schmiedel:
227.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1548.9
HPA sample
nTPM
Classical monocyte nTPM: 1548.9
Samples: 6
Max nTPM: 3130.1
Min nTPM: 1027.4
P10809_1003
3130.1
P10809_1020
1321.9
P10809_1039
1104.9
P10809_1058
1280.5
P10809_1080
1027.4
P10809_1107
1428.6
Intermediate monocyte nTPM: 1329.3
Samples: 6
Max nTPM: 1689.5
Min nTPM: 1008.3
P10809_1004
1307.9
P10809_1023
1453.6
P10809_1042
1323.1
P10809_1061
1008.3
P10809_1081
1193.3
P10809_1108
1689.5
Non-classical monocyte nTPM: 1219.3
Samples: 5
Max nTPM: 1538.8
Min nTPM: 806.5
P10809_1005
1501.6
P10809_1053
1166.1
P10809_1072
806.5
P10809_1082
1083.6
P10809_1109
1538.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
625.1
Monaco sample
nTPM
Classical monocyte nTPM: 395.2
Samples: 4
Max nTPM: 609.3
Min nTPM: 257.2
RHH5313_R3680
609.3
RHH5221_R3593
257.2
RHH5250_R3622
302.3
RHH5279_R3651
411.9
Intermediate monocyte nTPM: 625.1
Samples: 4
Max nTPM: 733.2
Min nTPM: 409.7
RHH5314_R3681
709.3
RHH5222_R3594
648.2
RHH5251_R3623
733.2
RHH5280_R3652
409.7
Non-classical monocyte nTPM: 458.2
Samples: 4
Max nTPM: 733.6
Min nTPM: 279.9
RHH5315_R3682
733.6
RHH5223_R3595
335.7
RHH5252_R3624
483.4
RHH5281_R3653
279.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
227.5
Schmiedel sample id
TPM
Classical monocyte TPM: 227.4
Samples: 91
Max TPM: 304.2
Min TPM: 160.4
MONOCYTES_1
304.2
MONOCYTES_2
271.5
MONOCYTES_3
269.7
MONOCYTES_4
269.6
MONOCYTES_5
265.6
MONOCYTES_6
264.1
MONOCYTES_7
264.0
MONOCYTES_8
263.9
MONOCYTES_9
263.3
MONOCYTES_10
259.4
MONOCYTES_11
259.1
MONOCYTES_12
255.8
MONOCYTES_13
255.7
MONOCYTES_14
255.6
MONOCYTES_15
254.0
MONOCYTES_16
252.8
MONOCYTES_17
250.6
MONOCYTES_18
249.3
MONOCYTES_19
248.5
MONOCYTES_20
247.4
MONOCYTES_21
246.7
MONOCYTES_22
244.8
MONOCYTES_23
244.7
MONOCYTES_24
244.5
MONOCYTES_25
244.1
MONOCYTES_26
244.1
MONOCYTES_27
243.7
MONOCYTES_28
243.1
MONOCYTES_29
241.5
MONOCYTES_30
240.7
MONOCYTES_31
240.5
MONOCYTES_32
239.0
MONOCYTES_33
237.6
MONOCYTES_34
237.5
MONOCYTES_35
237.3
MONOCYTES_36
235.8
MONOCYTES_37
235.6
MONOCYTES_38
234.2
MONOCYTES_39
234.1
MONOCYTES_40
233.7
MONOCYTES_41
233.6
MONOCYTES_42
233.6
MONOCYTES_43
232.5
MONOCYTES_44
231.4
MONOCYTES_45
229.9
MONOCYTES_46
227.8
MONOCYTES_47
227.6
MONOCYTES_48
227.4
MONOCYTES_49
226.3
MONOCYTES_50
226.1
MONOCYTES_51
225.0
MONOCYTES_52
224.6
MONOCYTES_53
222.6
MONOCYTES_54
221.8
MONOCYTES_55
220.8
MONOCYTES_56
220.7
MONOCYTES_57
219.6
MONOCYTES_58
218.7
MONOCYTES_59
216.9
MONOCYTES_60
216.0
MONOCYTES_61
214.1
MONOCYTES_62
213.2
MONOCYTES_63
212.0
MONOCYTES_64
211.8
MONOCYTES_65
210.1
MONOCYTES_66
207.4
MONOCYTES_67
207.3
MONOCYTES_68
206.1
MONOCYTES_69
206.1
MONOCYTES_70
205.3
MONOCYTES_71
205.2
MONOCYTES_72
204.3
MONOCYTES_73
203.6
MONOCYTES_74
202.7
MONOCYTES_75
200.6
MONOCYTES_76
200.1
MONOCYTES_77
200.0
MONOCYTES_78
199.9
MONOCYTES_79
199.5
MONOCYTES_80
199.0
MONOCYTES_81
197.7
MONOCYTES_82
196.9
MONOCYTES_83
195.1
MONOCYTES_84
192.3
MONOCYTES_85
190.2
MONOCYTES_86
189.9
MONOCYTES_87
189.0
MONOCYTES_88
187.4
MONOCYTES_89
184.1
MONOCYTES_90
176.3
MONOCYTES_91
160.4
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Non-classical monocyte TPM: 202.3
Samples: 90
Max TPM: 276.4
Min TPM: 117.7
M2_1
276.4
M2_2
270.5
M2_3
250.1
M2_4
246.1
M2_5
240.4
M2_6
239.7
M2_7
238.7
M2_8
236.8
M2_9
236.6
M2_10
235.5
M2_11
234.7
M2_12
234.1
M2_13
232.5
M2_14
231.9
M2_15
231.6
M2_16
231.1
M2_17
230.7
M2_18
228.9
M2_19
227.1
M2_20
225.4
M2_21
225.2
M2_22
224.8
M2_23
222.7
M2_24
219.3
M2_25
218.9
M2_26
218.8
M2_27
218.0
M2_28
217.2
M2_29
216.9
M2_30
215.8
M2_31
214.0
M2_32
213.7
M2_33
213.6
M2_34
212.5
M2_35
212.1
M2_36
208.8
M2_37
208.1
M2_38
206.7
M2_39
206.7
M2_40
205.9
M2_41
205.1
M2_42
205.1
M2_43
204.6
M2_44
203.6
M2_45
203.6
M2_46
203.3
M2_47
201.0
M2_48
200.8
M2_49
199.9
M2_50
198.9
M2_51
198.2
M2_52
196.0
M2_53
195.4
M2_54
195.2
M2_55
195.1
M2_56
194.7
M2_57
194.1
M2_58
193.6
M2_59
192.2
M2_60
191.9
M2_61
191.4
M2_62
190.0
M2_63
189.2
M2_64
189.1
M2_65
188.8
M2_66
188.4
M2_67
187.2
M2_68
187.2
M2_69
184.7
M2_70
184.4
M2_71
184.1
M2_72
183.6
M2_73
182.7
M2_74
182.2
M2_75
178.6
M2_76
178.2
M2_77
175.6
M2_78
175.2
M2_79
175.0
M2_80
174.7
M2_81
171.0
M2_82
167.0
M2_83
162.5
M2_84
161.4
M2_85
155.8
M2_86
153.4
M2_87
143.4
M2_88
138.0
M2_89
118.1
M2_90
117.7
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