MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.5 nTPM
HPA Brain:188.7 nTPM
GTEx:50.5 nTPM
FANTOM5:117.4 Scaled Tags Per Million
Pig:346.9 nTPM
Mouse:271.2 nTPM
Allen mouse:4.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 188.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 152.0
2586 Male, age 75, left hemisphere 218.3
2019 Male, age 18, unknown 176.5
1833 Male, age 53, unknown 166.4
2828 Female, age 72, unknown 162.3
2219 Male, age 76, both hemispheres 153.3
1830 Male, age 51, unknown 141.6
1827 Male, age 72, unknown 133.6
1870 Female, age 42, unknown 123.4
2411 Female, age 72, unknown 123.0
2666 Male, age 74, left hemisphere 121.7
Dorsal raphe nucleus
nTPM: 124.9
1828 Male, age 53, unknown 138.3
2016 Female, age 72, unknown 125.4
2047 Male, age 72, unknown 125.2
2750 Male, age 76, both hemispheres 119.0
2298 Female, age 72, unknown 116.8
Inferior colliculus
nTPM: 172.5
1848 Female, age 42, unknown 207.2
2849 Male, age 72, unknown 181.8
1890 Male, age 53, unknown 163.7
2097 Female, age 72, unknown 137.5
Median raphe nucleus
nTPM: 91.8
2220 Male, age 76, midline 91.8
Periaquaductal grey, anterior
nTPM: 137.6
2502 Female, age 75, unknown 173.1
1947 Male, age 18, unknown 127.6
1795 Male, age 51, unknown 112.1
Periaquaductal grey, dorsal
nTPM: 125.6
1840 Male, age 53, unknown 144.0
2464 Female, age 72, unknown 140.2
2850 Male, age 76, both hemispheres 119.9
1831 Male, age 72, unknown 98.2
Periaquaductal grey, lateral
nTPM: 126.6
2140 Male, age 76, both hemispheres 150.3
2053 Male, age 18, unknown 121.5
2272 Male, age 74, both hemispheres 108.0
Pretectal area
nTPM: 170.9
1817 Female, age 42, unknown 237.5
1816 Male, age 51, unknown 221.0
1815 Male, age 53, unknown 198.1
1944 Female, age 72, unknown 191.3
2007 Male, age 72, unknown 182.2
2316 Male, age 76, right hemisphere 181.8
2667 Female, age 75, unknown 178.3
2825 Male, age 18, unknown 132.2
2407 Male, age 75, both hemispheres 130.3
2224 Female, age 72, unknown 122.6
2273 Male, age 74, both hemispheres 104.2
Red nucleus
nTPM: 188.7
1904 Male, age 53, unknown 237.1
2227 Male, age 72, unknown 206.6
2503 Female, age 72, unknown 205.1
2588 Male, age 74, left hemisphere 202.4
1954 Female, age 42, unknown 201.4
1821 Female, age 72, unknown 197.3
2769 Male, age 72, unknown 196.5
2823 Male, age 76, right hemisphere 192.0
1865 Male, age 51, unknown 184.1
2785 Male, age 18, unknown 172.5
2725 Female, age 75, unknown 149.6
2584 Male, age 75, left hemisphere 120.3
Substantia nigra
nTPM: 141.8
1889 Female, age 72, unknown 206.7
1916 Female, age 42, unknown 166.4
2699 Male, age 18, unknown 157.7
2241 Male, age 72, unknown 143.0
2583 Male, age 75, right hemisphere 137.1
2409 Female, age 72, unknown 133.5
1851 Male, age 51, unknown 130.8
2665 Male, age 74, both hemispheres 128.3
2590 Female, age 75, unknown 124.2
1941 Male, age 53, unknown 89.9
Superior colliculus
nTPM: 166.5
1895 Male, age 76, right hemisphere 210.2
2087 Female, age 72, unknown 204.4
2261 Male, age 18, unknown 181.9
2664 Male, age 75, both hemispheres 170.9
2668 Female, age 75, unknown 166.5
1995 Male, age 72, unknown 164.2
1839 Male, age 51, unknown 156.7
1796 Male, age 53, unknown 147.5
1913 Female, age 42, unknown 134.6
2587 Male, age 74, left hemisphere 128.4
Ventral tegmental area
nTPM: 124.5
2410 Female, age 72, unknown 159.3
1942 Male, age 51, unknown 132.8
2218 Male, age 76, both hemispheres 128.1
2223 Female, age 72, unknown 113.4
1915 Female, age 42, unknown 112.1
2021 Male, age 53, unknown 101.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 50.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.5
Samples: 183

Max nTPM: 119.9
Min nTPM: 10.1
Std nTPM: 19.2
Median nTPM: 50.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 119.9
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 113.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 97.5
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 90.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 87.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 87.0
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 84.7
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 82.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 80.4
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 79.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 77.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 117.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 117.4
FF:10158-103A5 76 years, female 117.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 346.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 215.2
Samples: 4

Max nTPM: 282.7
Min nTPM: 159.9
Sample A Female 227.4
Sample B Female 159.9
Sample C Male 190.6
Sample D Male 282.7
Midbrain
nTPM: 337.6
Samples: 4

Max nTPM: 551.7
Min nTPM: 221.4
Sample A Female 236.6
Sample B Female 221.4
Sample C Male 551.7
Sample D Male 340.8
Periaqueductal gray
nTPM: 200.3
Samples: 3

Max nTPM: 251.6
Min nTPM: 165.6
Sample B Female 251.6
Sample C Male 183.8
Sample D Male 165.6
Superior colliculi
nTPM: 347.0
Samples: 4

Max nTPM: 433.2
Min nTPM: 222.2
Sample A Female 348.1
Sample B Female 222.2
Sample C Male 384.4
Sample D Male 433.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 271.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 271.2
Samples: 4

Max nTPM: 276.1
Min nTPM: 262.7
Sample A Male 271.7
Sample B Male 262.7
Sample C Female 274.1
Sample D Female 276.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.0
79591685 Antisense, RP_071204_04_H01, Mouse strain C57BL/6J (56 days, male) 9.1
79904152 Antisense, RP_071204_04_H01, Mouse strain C57BL/6J (56 days, male) 6.4
477 Antisense, RP_Baylor_253976, Mouse strain C57BL/6J (56 days, male) 2.9
476 Antisense, RP_Baylor_253976, Mouse strain C57BL/6J (56 days, male) 0.8
478 Sense, RPS_Baylor_37137, Mouse strain C57BL/6J (56 days, male) 0.0

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