A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.6
nTPM
Monaco:
41.8
nTPM
Schmiedel:
38.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.6
HPA sample
nTPM
NK-cell nTPM: 5.6
Samples: 6
Max nTPM: 14.1
Min nTPM: 0.1
P10809_1013
7.2
P10809_1033
2.3
P10809_1052
7.5
P10809_1071
14.1
P10809_1093
0.1
P10809_1103
2.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
41.8
Monaco sample
nTPM
NK-cell nTPM: 41.8
Samples: 4
Max nTPM: 44.1
Min nTPM: 40.3
RHH5316_R3683
41.6
RHH5224_R3596
41.1
RHH5253_R3625
44.1
RHH5282_R3654
40.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.4
Schmiedel sample id
TPM
NK-cell TPM: 38.4
Samples: 90
Max TPM: 51.5
Min TPM: 24.1
NK_1
51.5
NK_2
49.7
NK_3
48.6
NK_4
48.4
NK_5
48.3
NK_6
48.2
NK_7
47.1
NK_8
46.6
NK_9
45.1
NK_10
44.7
NK_11
44.2
NK_12
44.0
NK_13
44.0
NK_14
43.4
NK_15
43.2
NK_16
42.6
NK_17
42.4
NK_18
42.1
NK_19
41.9
NK_20
41.7
NK_21
40.9
NK_22
40.7
NK_23
40.6
NK_24
40.5
NK_25
40.4
NK_26
40.4
NK_27
40.4
NK_28
40.3
NK_29
40.2
NK_30
40.1
NK_31
40.1
NK_32
40.1
NK_33
40.0
NK_34
39.9
NK_35
39.9
NK_36
39.9
NK_37
39.7
NK_38
39.5
NK_39
39.4
NK_40
39.1
NK_41
38.9
NK_42
38.8
NK_43
38.7
NK_44
38.5
NK_45
38.2
NK_46
38.2
NK_47
38.1
NK_48
38.1
NK_49
38.0
NK_50
37.9
NK_51
37.9
NK_52
37.7
NK_53
37.6
NK_54
37.5
NK_55
37.5
NK_56
37.4
NK_57
37.4
NK_58
36.9
NK_59
36.5
NK_60
36.3
NK_61
36.2
NK_62
36.2
NK_63
35.6
NK_64
35.6
NK_65
35.3
NK_66
35.3
NK_67
35.1
NK_68
34.9
NK_69
34.6
NK_70
34.6
NK_71
34.4
NK_72
34.2
NK_73
34.1
NK_74
34.1
NK_75
33.9
NK_76
33.8
NK_77
33.6
NK_78
33.5
NK_79
33.2
NK_80
33.0
NK_81
33.0
NK_82
32.9
NK_83
32.6
NK_84
32.4
NK_85
31.7
NK_86
30.9
NK_87
28.7
NK_88
28.6
NK_89
27.5
NK_90
24.1
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