A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.0
nTPM
Monaco:
67.5
nTPM
Schmiedel:
55.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.0
HPA sample
nTPM
Classical monocyte nTPM: 15.0
Samples: 6
Max nTPM: 23.0
Min nTPM: 9.0
P10809_1003
11.8
P10809_1020
11.2
P10809_1039
9.0
P10809_1058
23.0
P10809_1080
17.8
P10809_1107
17.2
Intermediate monocyte nTPM: 11.0
Samples: 6
Max nTPM: 14.3
Min nTPM: 7.3
P10809_1004
12.0
P10809_1023
10.3
P10809_1042
7.3
P10809_1061
13.7
P10809_1081
14.3
P10809_1108
8.3
Non-classical monocyte nTPM: 13.1
Samples: 5
Max nTPM: 21.5
Min nTPM: 8.4
P10809_1005
12.0
P10809_1053
10.1
P10809_1072
21.5
P10809_1082
13.4
P10809_1109
8.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
67.5
Monaco sample
nTPM
Classical monocyte nTPM: 53.8
Samples: 4
Max nTPM: 60.2
Min nTPM: 42.8
RHH5313_R3680
54.8
RHH5221_R3593
60.2
RHH5250_R3622
57.3
RHH5279_R3651
42.8
Intermediate monocyte nTPM: 47.8
Samples: 4
Max nTPM: 55.3
Min nTPM: 34.2
RHH5314_R3681
49.6
RHH5222_R3594
52.2
RHH5251_R3623
34.2
RHH5280_R3652
55.3
Non-classical monocyte nTPM: 67.5
Samples: 4
Max nTPM: 104.8
Min nTPM: 53.8
RHH5315_R3682
55.3
RHH5223_R3595
104.8
RHH5252_R3624
56.1
RHH5281_R3653
53.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.0
Schmiedel sample id
TPM
Classical monocyte TPM: 33.8
Samples: 91
Max TPM: 44.6
Min TPM: 20.9
MONOCYTES_1
44.6
MONOCYTES_2
43.6
MONOCYTES_3
43.0
MONOCYTES_4
42.5
MONOCYTES_5
41.6
MONOCYTES_6
41.6
MONOCYTES_7
41.2
MONOCYTES_8
40.9
MONOCYTES_9
40.2
MONOCYTES_10
40.1
MONOCYTES_11
40.0
MONOCYTES_12
39.7
MONOCYTES_13
39.4
MONOCYTES_14
39.4
MONOCYTES_15
39.1
MONOCYTES_16
39.1
MONOCYTES_17
39.1
MONOCYTES_18
38.7
MONOCYTES_19
38.6
MONOCYTES_20
38.6
MONOCYTES_21
38.5
MONOCYTES_22
38.3
MONOCYTES_23
38.0
MONOCYTES_24
37.7
MONOCYTES_25
37.7
MONOCYTES_26
37.6
MONOCYTES_27
37.4
MONOCYTES_28
36.8
MONOCYTES_29
36.8
MONOCYTES_30
36.6
MONOCYTES_31
36.6
MONOCYTES_32
36.4
MONOCYTES_33
36.1
MONOCYTES_34
36.1
MONOCYTES_35
36.0
MONOCYTES_36
35.8
MONOCYTES_37
35.7
MONOCYTES_38
35.2
MONOCYTES_39
35.2
MONOCYTES_40
35.2
MONOCYTES_41
35.1
MONOCYTES_42
35.0
MONOCYTES_43
34.7
MONOCYTES_44
34.2
MONOCYTES_45
34.1
MONOCYTES_46
34.0
MONOCYTES_47
33.9
MONOCYTES_48
33.9
MONOCYTES_49
33.7
MONOCYTES_50
33.6
MONOCYTES_51
33.5
MONOCYTES_52
33.2
MONOCYTES_53
33.1
MONOCYTES_54
33.0
MONOCYTES_55
33.0
MONOCYTES_56
32.5
MONOCYTES_57
32.0
MONOCYTES_58
32.0
MONOCYTES_59
32.0
MONOCYTES_60
31.7
MONOCYTES_61
31.6
MONOCYTES_62
31.6
MONOCYTES_63
31.4
MONOCYTES_64
31.0
MONOCYTES_65
31.0
MONOCYTES_66
30.8
MONOCYTES_67
30.8
MONOCYTES_68
30.4
MONOCYTES_69
30.3
MONOCYTES_70
30.2
MONOCYTES_71
29.3
MONOCYTES_72
29.3
MONOCYTES_73
29.1
MONOCYTES_74
29.0
MONOCYTES_75
29.0
MONOCYTES_76
28.7
MONOCYTES_77
28.1
MONOCYTES_78
27.8
MONOCYTES_79
27.1
MONOCYTES_80
26.5
MONOCYTES_81
25.9
MONOCYTES_82
25.9
MONOCYTES_83
25.8
MONOCYTES_84
25.6
MONOCYTES_85
25.0
MONOCYTES_86
24.9
MONOCYTES_87
24.8
MONOCYTES_88
23.8
MONOCYTES_89
23.4
MONOCYTES_90
23.1
MONOCYTES_91
20.9
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Non-classical monocyte TPM: 55.0
Samples: 90
Max TPM: 75.8
Min TPM: 39.1
M2_1
75.8
M2_2
75.4
M2_3
73.5
M2_4
69.0
M2_5
68.1
M2_6
67.5
M2_7
67.5
M2_8
67.5
M2_9
67.3
M2_10
66.4
M2_11
65.4
M2_12
65.1
M2_13
65.0
M2_14
65.0
M2_15
64.2
M2_16
62.5
M2_17
61.5
M2_18
60.4
M2_19
60.3
M2_20
59.4
M2_21
59.3
M2_22
59.3
M2_23
58.8
M2_24
58.3
M2_25
57.8
M2_26
57.6
M2_27
57.2
M2_28
56.7
M2_29
56.5
M2_30
56.3
M2_31
55.7
M2_32
55.7
M2_33
55.6
M2_34
55.6
M2_35
55.4
M2_36
55.2
M2_37
55.0
M2_38
54.8
M2_39
54.7
M2_40
54.3
M2_41
54.2
M2_42
53.9
M2_43
53.6
M2_44
53.4
M2_45
53.4
M2_46
53.1
M2_47
53.1
M2_48
53.1
M2_49
53.0
M2_50
53.0
M2_51
52.6
M2_52
52.5
M2_53
52.5
M2_54
52.4
M2_55
52.4
M2_56
52.1
M2_57
51.8
M2_58
51.6
M2_59
51.5
M2_60
51.3
M2_61
51.3
M2_62
51.1
M2_63
51.1
M2_64
51.0
M2_65
51.0
M2_66
50.9
M2_67
50.9
M2_68
50.9
M2_69
50.0
M2_70
49.5
M2_71
49.3
M2_72
49.0
M2_73
48.7
M2_74
48.7
M2_75
48.5
M2_76
48.4
M2_77
48.1
M2_78
48.1
M2_79
47.6
M2_80
47.3
M2_81
47.2
M2_82
47.1
M2_83
46.4
M2_84
46.0
M2_85
45.8
M2_86
45.7
M2_87
44.6
M2_88
43.0
M2_89
42.3
M2_90
39.1
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