MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.2 nTPM
HPA Brain:58.6 nTPM
GTEx:32.2 nTPM
FANTOM5:49.5 Scaled Tags Per Million
Pig:49.0 nTPM
Mouse:50.6 nTPM
Allen mouse:3.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 58.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.6
2586 Male, age 75, left hemisphere 77.6
2666 Male, age 74, left hemisphere 57.9
2828 Female, age 72, unknown 54.2
1870 Female, age 42, unknown 53.1
1827 Male, age 72, unknown 52.9
2019 Male, age 18, unknown 49.8
2411 Female, age 72, unknown 49.7
1833 Male, age 53, unknown 48.9
1830 Male, age 51, unknown 48.3
2219 Male, age 76, both hemispheres 43.5
Dorsal raphe nucleus
nTPM: 51.7
2047 Male, age 72, unknown 56.6
2750 Male, age 76, both hemispheres 53.9
2298 Female, age 72, unknown 52.9
1828 Male, age 53, unknown 48.6
2016 Female, age 72, unknown 46.7
Inferior colliculus
nTPM: 48.8
2097 Female, age 72, unknown 50.1
1848 Female, age 42, unknown 48.9
1890 Male, age 53, unknown 48.2
2849 Male, age 72, unknown 47.8
Median raphe nucleus
nTPM: 49.2
2220 Male, age 76, midline 49.2
Periaquaductal grey, anterior
nTPM: 58.6
1947 Male, age 18, unknown 60.6
1795 Male, age 51, unknown 58.5
2502 Female, age 75, unknown 56.7
Periaquaductal grey, dorsal
nTPM: 42.6
1840 Male, age 53, unknown 46.7
1831 Male, age 72, unknown 42.6
2464 Female, age 72, unknown 41.7
2850 Male, age 76, both hemispheres 39.3
Periaquaductal grey, lateral
nTPM: 48.5
2053 Male, age 18, unknown 52.3
2272 Male, age 74, both hemispheres 49.3
2140 Male, age 76, both hemispheres 43.8
Pretectal area
nTPM: 54.0
1816 Male, age 51, unknown 60.8
1817 Female, age 42, unknown 60.7
2007 Male, age 72, unknown 60.2
1815 Male, age 53, unknown 56.7
2667 Female, age 75, unknown 55.8
1944 Female, age 72, unknown 55.1
2407 Male, age 75, both hemispheres 53.1
2825 Male, age 18, unknown 50.6
2273 Male, age 74, both hemispheres 48.8
2224 Female, age 72, unknown 48.7
2316 Male, age 76, right hemisphere 43.0
Red nucleus
nTPM: 49.7
2588 Male, age 74, left hemisphere 55.7
1821 Female, age 72, unknown 52.8
1904 Male, age 53, unknown 52.7
2785 Male, age 18, unknown 52.5
2584 Male, age 75, left hemisphere 52.3
2503 Female, age 72, unknown 51.4
2227 Male, age 72, unknown 51.0
2769 Male, age 72, unknown 49.9
1954 Female, age 42, unknown 49.1
1865 Male, age 51, unknown 46.9
2725 Female, age 75, unknown 42.7
2823 Male, age 76, right hemisphere 39.6
Substantia nigra
nTPM: 53.1
2583 Male, age 75, right hemisphere 58.4
1916 Female, age 42, unknown 57.9
1851 Male, age 51, unknown 56.7
1889 Female, age 72, unknown 55.6
2590 Female, age 75, unknown 55.2
2409 Female, age 72, unknown 54.9
1941 Male, age 53, unknown 51.9
2665 Male, age 74, both hemispheres 51.2
2699 Male, age 18, unknown 44.5
2241 Male, age 72, unknown 44.1
Superior colliculus
nTPM: 53.5
2664 Male, age 75, both hemispheres 61.9
2261 Male, age 18, unknown 60.3
2668 Female, age 75, unknown 58.6
1796 Male, age 53, unknown 54.2
2587 Male, age 74, left hemisphere 53.7
1839 Male, age 51, unknown 51.7
1995 Male, age 72, unknown 50.8
1913 Female, age 42, unknown 48.6
2087 Female, age 72, unknown 48.0
1895 Male, age 76, right hemisphere 47.3
Ventral tegmental area
nTPM: 51.8
2410 Female, age 72, unknown 58.9
1915 Female, age 42, unknown 53.5
2223 Female, age 72, unknown 51.4
1942 Male, age 51, unknown 50.7
2021 Male, age 53, unknown 48.7
2218 Male, age 76, both hemispheres 47.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 32.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.2
Samples: 183

Max nTPM: 47.9
Min nTPM: 21.0
Std nTPM: 4.4
Median nTPM: 31.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 47.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 46.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 43.5
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 43.2
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 43.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 42.5
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 42.4
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 41.2
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 40.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 40.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 40.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 49.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.5
FF:10158-103A5 76 years, female 49.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 49.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 46.6
Samples: 4

Max nTPM: 54.3
Min nTPM: 41.2
Sample A Female 54.3
Sample B Female 41.2
Sample C Male 42.8
Sample D Male 47.9
Midbrain
nTPM: 49.0
Samples: 4

Max nTPM: 67.6
Min nTPM: 40.0
Sample A Female 67.6
Sample B Female 42.5
Sample C Male 45.9
Sample D Male 40.0
Periaqueductal gray
nTPM: 38.7
Samples: 3

Max nTPM: 43.0
Min nTPM: 35.0
Sample B Female 38.1
Sample C Male 43.0
Sample D Male 35.0
Superior colliculi
nTPM: 44.2
Samples: 4

Max nTPM: 49.6
Min nTPM: 40.5
Sample A Female 49.6
Sample B Female 40.5
Sample C Male 43.6
Sample D Male 43.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 50.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 50.6
Samples: 4

Max nTPM: 51.9
Min nTPM: 48.9
Sample A Male 48.9
Sample B Male 50.3
Sample C Female 51.9
Sample D Female 51.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
68845436 Antisense, RP_050224_01_G07, Mouse strain C57BL/6J (56 days, male) 3.9

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