MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:184.4 nTPM
HPA Brain:264.7 nTPM
GTEx:184.4 nTPM
FANTOM5:94.4 Scaled Tags Per Million
Pig:147.2 nTPM
Mouse:287.8 nTPM
Allen mouse:12.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 264.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 208.3
2586 Male, age 75, left hemisphere 307.2
2666 Male, age 74, left hemisphere 267.6
2828 Female, age 72, unknown 230.8
1827 Male, age 72, unknown 215.1
2019 Male, age 18, unknown 195.6
2411 Female, age 72, unknown 193.0
2219 Male, age 76, both hemispheres 192.0
1870 Female, age 42, unknown 170.8
1833 Male, age 53, unknown 158.5
1830 Male, age 51, unknown 151.9
Dorsal raphe nucleus
nTPM: 214.3
2047 Male, age 72, unknown 242.7
1828 Male, age 53, unknown 232.8
2298 Female, age 72, unknown 225.7
2750 Male, age 76, both hemispheres 187.2
2016 Female, age 72, unknown 183.0
Inferior colliculus
nTPM: 177.1
2097 Female, age 72, unknown 205.4
1890 Male, age 53, unknown 185.4
1848 Female, age 42, unknown 165.4
2849 Male, age 72, unknown 152.4
Median raphe nucleus
nTPM: 191.8
2220 Male, age 76, midline 191.8
Periaquaductal grey, anterior
nTPM: 264.1
1947 Male, age 18, unknown 293.5
1795 Male, age 51, unknown 270.9
2502 Female, age 75, unknown 227.8
Periaquaductal grey, dorsal
nTPM: 154.8
1840 Male, age 53, unknown 171.0
2464 Female, age 72, unknown 162.8
1831 Male, age 72, unknown 150.7
2850 Male, age 76, both hemispheres 134.9
Periaquaductal grey, lateral
nTPM: 154.1
2053 Male, age 18, unknown 164.0
2272 Male, age 74, both hemispheres 160.8
2140 Male, age 76, both hemispheres 137.5
Pretectal area
nTPM: 201.7
2007 Male, age 72, unknown 266.4
1816 Male, age 51, unknown 262.1
1817 Female, age 42, unknown 231.8
1944 Female, age 72, unknown 217.3
2667 Female, age 75, unknown 207.2
1815 Male, age 53, unknown 200.4
2224 Female, age 72, unknown 177.7
2825 Male, age 18, unknown 176.8
2407 Male, age 75, both hemispheres 168.9
2273 Male, age 74, both hemispheres 168.6
2316 Male, age 76, right hemisphere 141.2
Red nucleus
nTPM: 196.7
2588 Male, age 74, left hemisphere 243.8
2503 Female, age 72, unknown 235.0
1821 Female, age 72, unknown 221.7
2725 Female, age 75, unknown 199.7
2769 Male, age 72, unknown 198.7
2227 Male, age 72, unknown 195.9
2785 Male, age 18, unknown 190.6
2584 Male, age 75, left hemisphere 185.9
1954 Female, age 42, unknown 183.1
1904 Male, age 53, unknown 178.1
1865 Male, age 51, unknown 169.9
2823 Male, age 76, right hemisphere 157.3
Substantia nigra
nTPM: 264.7
1916 Female, age 42, unknown 391.6
1851 Male, age 51, unknown 321.4
2665 Male, age 74, both hemispheres 301.6
1941 Male, age 53, unknown 298.2
2241 Male, age 72, unknown 248.5
1889 Female, age 72, unknown 232.8
2590 Female, age 75, unknown 221.2
2583 Male, age 75, right hemisphere 217.6
2699 Male, age 18, unknown 213.1
2409 Female, age 72, unknown 201.5
Superior colliculus
nTPM: 190.7
2668 Female, age 75, unknown 236.0
2261 Male, age 18, unknown 227.4
2664 Male, age 75, both hemispheres 223.0
1796 Male, age 53, unknown 222.1
2087 Female, age 72, unknown 207.9
2587 Male, age 74, left hemisphere 195.1
1839 Male, age 51, unknown 167.6
1913 Female, age 42, unknown 147.4
1895 Male, age 76, right hemisphere 141.4
1995 Male, age 72, unknown 139.0
Ventral tegmental area
nTPM: 225.0
1915 Female, age 42, unknown 273.9
2410 Female, age 72, unknown 256.5
2218 Male, age 76, both hemispheres 234.9
1942 Male, age 51, unknown 225.0
2223 Female, age 72, unknown 182.7
2021 Male, age 53, unknown 176.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 184.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 184.4
Samples: 183

Max nTPM: 409.8
Min nTPM: 38.6
Std nTPM: 50.7
Median nTPM: 177.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 409.8
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 377.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 311.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 299.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 297.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 289.0
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 278.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 277.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 276.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 273.2
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 270.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 94.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 94.4
FF:10158-103A5 76 years, female 94.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 147.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 147.1
Samples: 4

Max nTPM: 176.6
Min nTPM: 124.4
Sample A Female 176.6
Sample B Female 124.4
Sample C Male 153.3
Sample D Male 134.1
Midbrain
nTPM: 147.2
Samples: 4

Max nTPM: 191.4
Min nTPM: 119.3
Sample A Female 191.4
Sample B Female 144.9
Sample C Male 133.2
Sample D Male 119.3
Periaqueductal gray
nTPM: 118.0
Samples: 3

Max nTPM: 127.5
Min nTPM: 109.3
Sample B Female 127.5
Sample C Male 117.1
Sample D Male 109.3
Superior colliculi
nTPM: 130.8
Samples: 4

Max nTPM: 153.9
Min nTPM: 100.5
Sample A Female 153.9
Sample B Female 100.5
Sample C Male 133.5
Sample D Male 135.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 287.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 287.8
Samples: 4

Max nTPM: 321.6
Min nTPM: 273.5
Sample A Male 321.6
Sample B Male 276.4
Sample C Female 279.7
Sample D Female 273.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 12.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.1
69783208 Antisense, RP_050505_04_E11, Mouse strain C57BL/6J (56 days, male) 12.1

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo