MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.8 nTPM
HPA Brain:50.6 nTPM
GTEx:4.8 nTPM
FANTOM5:57.4 Scaled Tags Per Million
Pig:31.0 nTPM
Mouse:21.1 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 50.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.3
2219 Male, age 76, both hemispheres 56.8
2411 Female, age 72, unknown 50.0
1870 Female, age 42, unknown 47.8
1830 Male, age 51, unknown 47.7
1827 Male, age 72, unknown 44.7
1833 Male, age 53, unknown 44.4
2666 Male, age 74, left hemisphere 44.1
2019 Male, age 18, unknown 38.2
2828 Female, age 72, unknown 35.9
2586 Male, age 75, left hemisphere 33.2
Dorsal raphe nucleus
nTPM: 40.8
2750 Male, age 76, both hemispheres 43.4
2047 Male, age 72, unknown 43.0
1828 Male, age 53, unknown 41.9
2016 Female, age 72, unknown 40.7
2298 Female, age 72, unknown 34.8
Inferior colliculus
nTPM: 50.6
1848 Female, age 42, unknown 54.3
2849 Male, age 72, unknown 53.6
2097 Female, age 72, unknown 53.1
1890 Male, age 53, unknown 41.5
Median raphe nucleus
nTPM: 36.0
2220 Male, age 76, midline 36.0
Periaquaductal grey, anterior
nTPM: 47.0
1947 Male, age 18, unknown 59.7
1795 Male, age 51, unknown 41.1
2502 Female, age 75, unknown 40.1
Periaquaductal grey, dorsal
nTPM: 40.9
2464 Female, age 72, unknown 45.7
1840 Male, age 53, unknown 41.6
1831 Male, age 72, unknown 38.9
2850 Male, age 76, both hemispheres 37.3
Periaquaductal grey, lateral
nTPM: 39.1
2053 Male, age 18, unknown 45.0
2140 Male, age 76, both hemispheres 37.5
2272 Male, age 74, both hemispheres 34.9
Pretectal area
nTPM: 42.3
2316 Male, age 76, right hemisphere 50.8
2825 Male, age 18, unknown 46.8
2407 Male, age 75, both hemispheres 46.5
1816 Male, age 51, unknown 45.5
1944 Female, age 72, unknown 44.7
2007 Male, age 72, unknown 43.9
2224 Female, age 72, unknown 41.1
1817 Female, age 42, unknown 38.6
1815 Male, age 53, unknown 37.6
2273 Male, age 74, both hemispheres 35.2
2667 Female, age 75, unknown 35.0
Red nucleus
nTPM: 43.4
2503 Female, age 72, unknown 51.8
2725 Female, age 75, unknown 50.4
1865 Male, age 51, unknown 47.0
2823 Male, age 76, right hemisphere 46.9
2588 Male, age 74, left hemisphere 45.9
1954 Female, age 42, unknown 42.3
1821 Female, age 72, unknown 41.3
2769 Male, age 72, unknown 40.6
1904 Male, age 53, unknown 40.5
2227 Male, age 72, unknown 40.2
2584 Male, age 75, left hemisphere 36.7
2785 Male, age 18, unknown 36.7
Substantia nigra
nTPM: 41.9
1941 Male, age 53, unknown 59.9
2241 Male, age 72, unknown 50.0
2590 Female, age 75, unknown 45.0
2409 Female, age 72, unknown 44.1
1889 Female, age 72, unknown 43.0
2583 Male, age 75, right hemisphere 39.5
2665 Male, age 74, both hemispheres 37.0
1916 Female, age 42, unknown 36.9
1851 Male, age 51, unknown 31.8
2699 Male, age 18, unknown 31.4
Superior colliculus
nTPM: 43.1
1895 Male, age 76, right hemisphere 59.4
1839 Male, age 51, unknown 48.7
2668 Female, age 75, unknown 46.0
2261 Male, age 18, unknown 44.9
2587 Male, age 74, left hemisphere 44.3
2087 Female, age 72, unknown 43.0
1796 Male, age 53, unknown 40.7
1913 Female, age 42, unknown 36.1
1995 Male, age 72, unknown 34.8
2664 Male, age 75, both hemispheres 33.6
Ventral tegmental area
nTPM: 36.3
1915 Female, age 42, unknown 39.8
2410 Female, age 72, unknown 38.1
1942 Male, age 51, unknown 35.7
2021 Male, age 53, unknown 35.3
2223 Female, age 72, unknown 34.7
2218 Male, age 76, both hemispheres 34.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 4.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.8
Samples: 183

Max nTPM: 11.6
Min nTPM: 1.6
Std nTPM: 1.7
Median nTPM: 4.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 11.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 10.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 9.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 9.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 9.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 9.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 8.4
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 8.4
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 7.9
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 7.8
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 7.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 57.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.4
FF:10158-103A5 76 years, female 57.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 31.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.8
Samples: 4

Max nTPM: 33.1
Min nTPM: 24.8
Sample A Female 32.4
Sample B Female 28.7
Sample C Male 33.1
Sample D Male 24.8
Midbrain
nTPM: 30.0
Samples: 4

Max nTPM: 36.5
Min nTPM: 23.0
Sample A Female 23.0
Sample B Female 36.5
Sample C Male 30.3
Sample D Male 30.3
Periaqueductal gray
nTPM: 31.0
Samples: 3

Max nTPM: 32.8
Min nTPM: 27.7
Sample B Female 32.5
Sample C Male 32.8
Sample D Male 27.7
Superior colliculi
nTPM: 28.6
Samples: 4

Max nTPM: 35.4
Min nTPM: 20.8
Sample A Female 29.7
Sample B Female 20.8
Sample C Male 35.4
Sample D Male 28.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 21.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.1
Samples: 4

Max nTPM: 22.9
Min nTPM: 19.0
Sample A Male 20.5
Sample B Male 22.9
Sample C Female 19.0
Sample D Female 21.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
75041528 Antisense, RP_060412_04_E11, Mouse strain C57BL/6J (56 days, male) 0.4
70301001 Antisense, RP_050607_02_H08, Mouse strain C57BL/6J (56 days, male) 0.0

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