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  • CSRP1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:489.1 nTPM
HPA Brain:621.9 nTPM
GTEx:489.1 nTPM
FANTOM5:642.0 Scaled Tags Per Million
Pig:140.4 nTPM
Mouse:242.8 nTPM
Allen mouse:2.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

621.9
Sample id Sample description nTPM
Amygdala
nTPM: 621.9
2695 Female, age 67, right hemisphere 1028.4
2814 Male, age 76, right hemisphere 779.1
2514 Male, age 75, right hemisphere 474.0
2517 Female, age 94, left hemisphere 419.1
1987 Female, age 91, left hemisphere 408.9
Basal amygdala
nTPM: 444.4
2609 Male, age 75, right hemisphere 623.5
1955 Male, age 76, both hemispheres 499.7
2110 Male, age 80, left hemisphere 466.2
2685 Female, age 94, left hemisphere 383.8
2827 Female, age 67, right hemisphere 377.6
2243 Female, age 91, right hemisphere 315.6
Central amygdala
nTPM: 497.0
1905 Male, age 76, both hemispheres 695.4
2515 Male, age 75, right hemisphere 534.9
2826 Female, age 94, left hemisphere 468.8
2701 Female, age 91, right hemisphere 397.0
2239 Male, age 80, left hemisphere 388.9
Corticomedial amygdala
nTPM: 364.5
2428 Male, age 75, right hemisphere 503.2
2829 Male, age 80, left hemisphere 407.4
2240 Male, age 76, both hemispheres 400.6
2429 Female, age 94, left hemisphere 312.2
2242 Female, age 91, right hemisphere 282.9
2535 Female, age 67, right hemisphere 280.5
Lateral amygdala
nTPM: 467.0
1883 Male, age 76, both hemispheres 580.2
2516 Male, age 75, right hemisphere 561.6
2256 Male, age 80, left hemisphere 476.8
2830 Female, age 67, right hemisphere 471.4
2255 Female, age 91, right hemisphere 380.3
2534 Female, age 94, left hemisphere 331.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

489.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 489.1
Samples: 181

Max nTPM: 994.7
Min nTPM: 203.8
Std nTPM: 148.2
Median nTPM: 475.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 994.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 976.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 946.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 903.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 901.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 797.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 797.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 785.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 758.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 746.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 737.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 729.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 720.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 714.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 712.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 672.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 670.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 666.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 663.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 656.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 652.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 652.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 650.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 650.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 648.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 647.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 646.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 644.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 642.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 641.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 622.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 622.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 619.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 617.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 615.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 609.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 607.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 607.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 598.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 596.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 594.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 594.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 590.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 586.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 582.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 577.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 572.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 568.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 563.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 560.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 556.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 554.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 553.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 546.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 542.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 542.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 542.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 537.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 535.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 534.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 531.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 530.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 525.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 521.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 521.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 520.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 517.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 516.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 514.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 513.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 511.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 509.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 508.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 504.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 502.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 500.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 500.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 498.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 496.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 494.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 491.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 484.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 483.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 483.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 482.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 482.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 481.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 479.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 478.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 477.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 475.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 473.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 473.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 470.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 465.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 465.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 463.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 462.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 457.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 457.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 455.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 452.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 450.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 446.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 444.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 442.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 442.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 440.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 437.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 432.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 432.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 429.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 429.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 424.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 418.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 415.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 412.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 412.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 401.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 401.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 401.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 400.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 398.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 397.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 393.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 392.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 391.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 389.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 389.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 389.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 386.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 381.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 379.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 379.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 378.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 377.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 377.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 373.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 371.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 369.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 368.4
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 367.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 366.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 365.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 365.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 364.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 363.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 363.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 359.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 358.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 357.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 355.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 352.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 351.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 343.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 342.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 341.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 340.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 337.3
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 336.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 332.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 329.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 329.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 329.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 317.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 310.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 309.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 295.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 292.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 288.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 287.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 283.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 275.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 272.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 269.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 266.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 247.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 246.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 241.7
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 240.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 203.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

642.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 642.0
FF:10151-102I7 76 years, female 642.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

140.4
Pig sample Sample description nTPM
Amygdala
nTPM: 140.4
Samples: 4

Max nTPM: 195.1
Min nTPM: 73.2
Sample A Female 139.3
Sample B Female 195.1
Sample C Male 153.8
Sample D Male 73.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

242.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 242.8
Samples: 4

Max nTPM: 316.1
Min nTPM: 204.5
Sample A Male 204.5
Sample B Male 218.1
Sample C Female 316.1
Sample D Female 232.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.5
68269598 Antisense, RP_041129_01_H05, Mouse strain C57BL/6J (56 days, male) 2.8
2130 Antisense, RP_Baylor_102712, Mouse strain C57BL/6J (56 days, male) 2.2
2129 Antisense, RP_Baylor_102712, Mouse strain C57BL/6J (56 days, male) 1.3

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